BAC Information

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BAC

Clone NameMSMg01-271O15
Chromosome13 (Build37)
Map Location 115,097,874 - 115,098,113
singlet/doubletsinglet
Overlap geneNdufs4
Upstream geneBC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik
Downstream geneLOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271O15.T7 (MSMg01no271_o15.b1)MSMg01-271O15.TJ (MSMg01no271_o15.g1)
ACCAG411336AG411337
length829751
length of high quality
(start - end)
49 (66 - 114)251 (66 - 316)
definitionCHROMAT_FILE: MSMg01no271_o15.b1 PHD_FILE: MSMg01no271_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:54 2005CHROMAT_FILE: MSMg01no271_o15.g1 PHD_FILE: MSMg01no271_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGNGATTC
TGCTGTTGCGATTATCTGTGTGGTTTGGGTTCGTTTGGTTTAGTTGGGTT
GGGTTTGATTTAGCCCGCCTNACNNNNNNANNNNNANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCNAACTTTTTT
CATCTTCCCCCCTTCTTCCCCTTTCCTCCCCTCCTTTCCTTCNCCCTNTN
TCAACCCTTTTTTTTTTTTCACACCNCCCACCCAACACAAAANAAAAAAA
TTTTTATTTTTTTCCCNAAACAAACCCCCCAAAANNAAAAAAANAAANAA
AAAAAAAACCCCCCCCCCCAAAAAAAAAAAAAAAAAAACCCCCGCGCGGG
GGCGCCCCACACCCCCCCCACAACAACCCACCAAACACACCCAACCACCA
CCCCCACAACCCAACCACCTCGCACCTCCACACAACGTCCACCCCCCCCA
CGCACCATCTTAAACCTTATCATTATTCCCTATTCCTTCCCCTCTCTTAT
TCCCCCCCCAAATATATCCCACCTCTTCCAGACAATATCTCTCCCCTCCT
CAAGCCTTTTTTCCCACTAATTTATCAAAACCTACGCACAAATCCCATAC
ACCTTTCCTCCTCCGCGCTCATCACATTATTCTAACATATCCTCCTATAC
CCCCGCTAAAATAAATTTGCTTCTTCTAAACATGCTTCACCTACTTTAAT
TTCCCCCTACCTCACAACTTCTTATTTAG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCCAGAGAAATTCTTTCTTCTAGCGCTGACCCCCTCTCCAAAT
GGTTCTGACCTTCAGCGCCAAAGAAGATGCAATTGCCTTTGCAGAAAAAA
ACGGTATGACTCAGCCACCTGCCTGCCCCTCCTCCCTCCCTCTTTGCCTC
CCTCATTCTCTTCCTTCATTTCTTCCTTCCCTTCTCCCCTTCCTACCTCT
GTCCCTCCCTCCCTTCCTTCTTCCTACATCAAGATAAGATTTTGGGGGGT
TTTTTTGGTTGGGTTTTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTTTTTTTTCCCNNCCCCCCCCCTNNNTNNNNNNNNNCNNNNCNNCT
NNTTCCCCCCCCCCCCCNTAAAAAAAAAAAATATTCCCCTCCTTTCCCCC
CTTTATCCCAATCATTTATCATCCCTTTACCCCCCACCTTTCCCCTTTTT
TTCCATTATTACCCCTACAATTTCCCTTATTTTTCTTTTTTTCACCCCCA
TTATACCACTTAATCAATTATACCTTCTTTCCTTAATAAACTAAAAATTT
AAATTATCCTAACACAACCCACATTTTTACCCCATTTTCTTCTCCCACTT
TCCCACTTTTTTTTTTCTATCACTCCTATAATCCTTATAAACTAAATTTA
CCATTCCTCACAATTCTCACCATTTTCACCCCTCTCTTCCCACATTTTTC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_o15.g1 MSMg01no271_o15.g1 CHROMAT_FILE:
MSMg01no271_o15.g1 PHD_FILE: MSMg01no271_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:54 2005
         (251 letters)



>mm_chr13_115097803_115098454
          Length = 652

 Score =  433 bits (224), Expect = e-126
 Identities = 237/242 (97%), Gaps = 3/242 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctttcttctagcgctgaccccctctccaa-atggttctgaccttcagcgccaaaga 59
           ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 311 aattctttcttctagcgctgaccccctctccaacatggttctgaccttcagtgccaaaga 252

                                                                       
Query: 60  agatgcaattgcctttgcagaaaaaaacggtatgactcagccacctgcctgcccctcctc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agatgcaattgcctttgcagaaaaaaacggtatgactcagccacctgcctgcccctcctc 192

                                                                       
Query: 120 cctccctctttgcctccctcattctcttccttcatttcttccttcccttctccccttcct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cctccctctttgcctccctcattctcttccttcatttcttccttcccttctccccttcct 132

                                                                       
Query: 180 acctctgtccctccctcccttccttcttcctacatcaagataagattttggggggttttt 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 131 ccctctgtccctccctcccttccttcttcctacatcaagataagattttgggg--ttttt 74

             
Query: 240 tt 241
           ||
Sbjct: 73  tt 72


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 652
Length adjustment: 9
Effective length of query: 242
Effective length of database: 643
Effective search space:   155606
Effective search space used:   155606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)