BAC Information

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BAC

Clone NameMSMg01-272I05
Chromosome13 (Build37)
Map Location 75,556,853 - 75,557,102
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, Cast, LOC622204, EG544954, Pcsk1
Downstream geneLOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272I05.T7 (MSMg01no272_i05.b1)MSMg01-272I05.TJ (MSMg01no272_i05.g1)
ACCAG411774AG411775
length862744
length of high quality
(start - end)
279 (46 - 324)250 (77 - 326)
definitionCHROMAT_FILE: MSMg01no272_i05.b1 PHD_FILE: MSMg01no272_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:41 2005CHROMAT_FILE: MSMg01no272_i05.g1 PHD_FILE: MSMg01no272_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGCTTATCTCTGTTTCCCATTTTTTGGTAGGGTTATTTGGTTC
TCTGGAGTCTAACTTTTTTTTTTCCTTTTTTTTTTCTTTTTTTTTTCCTT
TCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCA
AAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCCGCCCACTCCCCC
TTTTTGGCCCTGGCGTTCCCCTGTTCTGGGGCATATAAAGTTTGTGTGTC
CAATGGGCCTCTCTTTCCAGTGATGTTTTTTTTAAGCCTATCTTCCGAAA
CATATGCAGCTAGATTTTTTTTTTTCCCCCCCACACCCCCCCATTCATAT
TTGTTGATTTATTTTATTGGTCTTGCCCCACCCCCATAAAAAAAAAAAAA
TGTCCGTTTCGTGTGGTGCGCCCCCACCTGGTTTTTTTTTTGTAACTCCA
TTTTTTTTTAGACTGAACTGTGGGTTAACCTTCTTTTCTTGAGTATTTGA
TTAAGATTTTCGCTCATTCTGTCCTACATCTAGAGTTGTTGTCCCTCATT
TTGGGGCCCCCGTTTTTGACATTAACCTCTTGGCTTTTTGTTTTAGCGGC
GCGACTGTTCATACTATCTATGGTTAGCTAGCATTATTGTGCCACGTGAT
TTTTCTCTATTTTTTTGCCCTTCCCCCCCCATGATGCCCCACACCGTTTT
CTTATATACTGCGCCTTATTCTCCTGTCGACCGGTGCATTCTTCTTACAT
CTGTTCTCGCCGCATGTTCATATACCCGCCAATCTGCGCTTTTACTCTCC
CCTGTTTTATTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATTCCTCTATATGTCATACGGA
ATTGACCCTGGGCTAACATACTGGTACCACCCATGTCTATCTCTGATATC
CTACAGGAACAAGGTGCTAACACCTCCCCTTTCAGATTGTCAGCAACCTT
CCTGCCTCCTTTGACATACAATGTTCTTCCTGTGTCAAACACACTCTCCC
ATGGTCACCATTAGAGACATCCTATGACAGAAGACACCACATATGAGGGT
TCAAATTCATCATCTTTTCTAGAGAATGTATACATGGATCTGAACAATAG
AGTCTCTCCACACATTTTTTACTTCCCNNATCCTNCACTATACCATTATT
TCAGAAGTAAGTACTTTACCAATTAAAGGACAGAAACCATGTTTAAAATT
CCAATTTATTGATAACAACAAAAAAAGTGTATAGAGTTAAGAATTAAAAA
GCAGTCTATCAAGCTGTGAGATGGCTCAGTGGTTAAGAGCGCTTACTTTT
CTTCCAAAGGTTCTGAGTTCAAATCTCAGCAACCACATGGTGTCTCACAA
CCATCTGCAATGTGATCTGATACCCTTTTCTGGTGTGTCTGGAGACAACT
ACAGTGTACTCATATACCTTATATAAATAACTACATAAATCTTTTTCTAA
ATGCAGCTTATCTTTAAAGATGCCTTATGAGGATTTTTTACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_i05.g1 MSMg01no272_i05.g1 CHROMAT_FILE:
MSMg01no272_i05.g1 PHD_FILE: MSMg01no272_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:41 2005
         (250 letters)



>mm_chr13_75556653_75557302
          Length = 650

 Score =  453 bits (234), Expect = e-132
 Identities = 246/250 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattcctctatatgtcatacggaattgaccctgggctaacatactggtaccacccatgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tcattcctctatatgtcatacggaattgaccctgggctaacatactggtatcacccatgt 260

                                                                       
Query: 61  ctatctctgatatcctacaggaacaaggtgctaacacctcccctttcagattgtcagcaa 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatctctgatatcctacaagaacaaggtgctaacacctcccctttcagattgtcagcaa 320

                                                                       
Query: 121 ccttcctgcctcctttgacatacaatgttcttcctgtgtcaaacacactctcccatggtc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctccctgcctcctttgacatacaatgttcttcctgtgtcaaacacactctcccatggtc 380

                                                                       
Query: 181 accattagagacatcctatgacagaagacaccacatatgagggttcaaattcatcatctt 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accattagaggcatcctatgacagaagacaccacatatgagggttcaaattcatcatctt 440

                     
Query: 241 ttctagagaa 250
           ||||||||||
Sbjct: 441 ttctagagaa 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)