Query= MSMg01no272_m16.b1 MSMg01no272_m16.b1 CHROMAT_FILE:
MSMg01no272_m16.b1 PHD_FILE: MSMg01no272_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:01 2005
(684 letters)
>mm_chr13_24771754_24772836
Length = 1083
Score = 1270 bits (657), Expect = 0.0
Identities = 675/681 (99%), Gaps = 1/681 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctaagtatgcctaggcttgcaggcacaagccccagaaggcgacatctctgcc 63
||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaattctctaagta-ggctaggcttgcaggcacaagccccagagggcgacatctctgcc 262
Query: 64 ttccttccactgagattgcaagcacataccaccaagcctgattactgttttcttaattgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttccttccactgagattgcaagcacataccaccaagcctgattactgttttcttaattgt 322
Query: 124 ttttaatttagcaagtaaaagatacatatgaatgcatagtatataacatgatattatgaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttttaatttagcaagtaaaagatacatatgaatgcatagtatataacatgatattatgaa 382
Query: 184 acaggcacacactagagagtagctgacccagcatgtttaacctggagcgtggatctcttc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acaggcacacactagagagtagctgacccagcatgtttaacctggagcgtggatctcttc 442
Query: 244 ctatttagtgtgcatggctgattctctgtcacaatgcctttttgtacagtcccgagtctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctatttagtgtgcatggctgattctctgtcacaatgcctttttgtacagtcccgagtctg 502
Query: 304 ttcttagaacatccacactctagagatgtctgactactttgatatcatctaacttgtcca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttcttagaacatccacactctagagatgtctgactactttgatatcatctaacttgtcca 562
Query: 364 cctaagccccagctatcccatgcaccgggagcggtgtgtcgtgctgcctgtcctgcagcg 423
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 563 cctaagccccagctatcccatgcacccggagcggtgtgtcgtgctgcctgtcctgcagcg 622
Query: 424 ggtactgtgtactcatggaagacaggaacatgcctctcgttcaatgttatcattgccgag 483
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggtactgtgtactcgtggaagacaggaacatgcctctcgttcaatgttatcattgccgag 682
Query: 484 acgccttgtgccaccgtgcagaggaatgcagatctgacatcatttcctatgctctttgca 543
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 acgtcttgtgccaccgtgcagaggaatgcagatctgacatcatttcctatgctctttgca 742
Query: 544 gaacatgtgtgccattgaagcggagttggagagtctgctgggagaattctccatcaagat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gaacatgtgtgccattgaagcggagttggagagtctgctgggagaattctccatcaagat 802
Query: 604 gaaaggtaatctgtccttgttcagagagggataaaggtgccatgtcgtccacagagcttc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gaaaggtaatctgtccttgttcagagagggataaaggtgccatgtcgtccacagagcttc 862
Query: 664 atgagaaggcatgtcattgca 684
|||||||||||||||||||||
Sbjct: 863 atgagaaggcatgtcattgca 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1083
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1073
Effective search space: 723202
Effective search space used: 723202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_m16.g1 MSMg01no272_m16.g1 CHROMAT_FILE:
MSMg01no272_m16.g1 PHD_FILE: MSMg01no272_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:02 2005
(287 letters)
>mm_chr13_24884223_24884909
Length = 687
Score = 493 bits (255), Expect = e-144
Identities = 276/283 (97%)
Strand = Plus / Minus
Query: 1 tgtgacacacccagaacagcaaggtcatagaaatgacaggaaggaaacctgtaagaccct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgtgacacacccagaacagcaaggtcatagaaatgacaggaaggaaacctgtaagacccc 424
Query: 61 ttctgcacggaaggattttagcacaaagtcaaggaccctctttgccctaagtgaaatagc 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 423 ctctgcacggaaggattttagcacaaagtcaaggaccctctttgctctaagtgcaatagc 364
Query: 121 taaattcctgagacagcagctttgcagagaaatgttgtgccaaaccagattaatcgtggc 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 363 taaattcctgagacagcagctttgcagagaaatgttgtgccaaactagattaatcatggc 304
Query: 181 tttctcgcagagcagatctgcaggaagaaatggaagttggaagtgagagcatgagtcaga 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tttcttgcagagcagatctgcaggaagaaatggaagttggaagtgagagcatgagtcaga 244
Query: 241 gtgtaacttgttaactggcacccttccttcctccggctctgcc 283
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gtgtaacttgttaactggcacccttccttcctccggctctgcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
