BAC Information

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BAC

Clone NameMSMg01-273F11
Chromosome13 (Build37)
Map Location 51,191,034 - 51,191,323
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717
Downstream geneSpin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273F11.T7 (MSMg01no273_f11.b1)MSMg01-273F11.TJ (MSMg01no273_f11.g1)
ACCAG412370AG412371
length730733
length of high quality
(start - end)
290 (67 - 356)287 (71 - 357)
definitionCHROMAT_FILE: MSMg01no273_f11.b1 PHD_FILE: MSMg01no273_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:42 2005CHROMAT_FILE: MSMg01no273_f11.g1 PHD_FILE: MSMg01no273_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTAGAGCTACCCCAAATACTCTTGTTAAACTAGGCTTGGCCTACATCCA
CCTCTACAATAAAGATAGACCCAGTCTAACCTATAGCTGAGTACACTGCT
TACAAATGACTCTTGGCCACAGATGGCTGAGCACACCAGGTTCTATAAGG
CAAATGTGGGCTCTGAGTCACTGAAGGTATTTTCTGAATGACATGTCCTT
TTCTCTAGCCACAGGCATAGTCTGTGAAGAGCCCACAGTAATTCTAGGCA
TTGCTGTGCTGACCCTATCTCTGTAGCTGTCTTCAGACACAGCAGAAGAG
GGCATCAGATTTTATTACACCCCCCCCCCGAGCCACCATGAGAATTGAAC
TCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCT
CCAGCCCATGCAAACCCCCATCTTTCTGCAGGTCCTCAAGTTCCCCATTG
TCCGTTGCAGTGAAACCACCTGGCCTTTGTTGAGCCCCATAAAGGTTAAG
ATAAGATTGCTGCTGCCCTGATCCTGCTATCCACCACACCCTGTGCTGGA
GAATTAACCCTCAATTTACAAATTCCTCCCCTTGACAAACCGCTCTTGGT
TTTGTGCTTCCAAAGGAAACTGCTCCCCTCCCCCTTCAAGGTCGGGTCAG
CTTCCCTAAACTGACTGGGATCCCTACCGG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATCTGTCATTCCAGCACTCCTCGTTTGAGG
TGGGAGGCAGTGACAGGACATCAGCTAAAAGCCCGAACGTCAGCTAGCCT
GAAATATGCAAGCAAGAAAAAACAAGAAAGACCCTGCCTCAACAAGGTAA
GAGGAGCCATCTTCTAAATGGTGTCCTCTCACCTCTGCATATGCTTCATC
GTACATGGTAGCCACATTCACATTCACACATATGTAGGGAGCCATTCCGG
ACTTCCTGGTCAGCAGGATGGAAGTCTGCTCCAGGTAGTAAACAAGCCCA
TGTTTGGTTGTATGCTCGCNNTTACTTNNCGATTGGCTGAGCAAGCCTGC
CTGGTGAGGTGATGTGACCTGAGAAAAATAGAAAGAAGGCGTGGTTGTGG
CTGGACAGGATAAAAACACTTGTAACTAGAGAGGCGGGGGATTTGAAGTA
AGTAGCTGCCTGAGTAAACTGCTTAAAGAAGAACCGGTGTTTGCGTCTTT
CTTGCTGGTCGAGTGGGACTCGACACACATATATACTTCATGCACACGAA
TAGCCCTGATGATGAGAATGATGGCGATGATGAGAATGATTCGCATAATA
ATGAACTTTTTTAATAATTATATATCCCAGAAAAGTGCTTAAGCTTTGGG
ACAGGCCAGGCCATTCATAATTTCCCAAAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_f11.b1 MSMg01no273_f11.b1 CHROMAT_FILE:
MSMg01no273_f11.b1 PHD_FILE: MSMg01no273_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:42 2005
         (290 letters)



>mm_chr13_51190871_51191560
          Length = 690

 Score =  507 bits (262), Expect = e-148
 Identities = 283/290 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactcttgttaaactaggcttggcctacatccacctctacaataaagatagacccagtc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 453 atactcttgttaaactaggcttggcctacatccacctctacaataaagatagataaagtc 394

                                                                       
Query: 61  taacctatagctgagtacactgcttacaaatgactcttggccacagatggctgagcacac 120
           |||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 393 taacctatagctgagtacgctgcttacaaatgactctcggccacagacggctgagcacac 334

                                                                       
Query: 121 caggttctataaggcaaatgtgggctctgagtcactgaaggtattttctgaatgacatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 caggttctataaggcaaatgtgggctctgagtcactgaaggtattttctgaatgacatgt 274

                                                                       
Query: 181 ccttttctctagccacaggcatagtctgtgaagagcccacagtaattctaggcattgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ccttttctctagccacaggcatagtctgtgaagagcccacagtaattctaggcattgctg 214

                                                             
Query: 241 tgctgaccctatctctgtagctgtcttcagacacagcagaagagggcatc 290
           ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 213 tgctgaccctatcactgtagctgtcttcagacacagcagaagagggcatc 164


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)