BAC Information

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BAC

Clone NameMSMg01-274D11
Chromosome13 (Build37)
Map Location 50,565,428 - 50,565,717
singlet/doubletsinglet
Overlap geneGm806
Upstream geneCenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17
Downstream geneEG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274D11.T7 (MSMg01no274_d11.b1)MSMg01-274D11.TJ (MSMg01no274_d11.g1)
ACCAG413012AG413013
length741741
length of high quality
(start - end)
538 (64 - 601)290 (64 - 353)
definitionCHROMAT_FILE: MSMg01no274_d11.b1 PHD_FILE: MSMg01no274_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:43 2005CHROMAT_FILE: MSMg01no274_d11.g1 PHD_FILE: MSMg01no274_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGA
TGGATTTCCGAACATCAGAAAGCCTTTGAAAATACTAAGGAGGCCCTGCT
GACTGTGCCATTCTTGCCATTGCCAGATCTAACCAAGCCCTTCATCCTCT
ATGTTGATGAGAAGGCGGGGGTGGCCAGAGGAGTTCTTACTCAGGCTCTA
TGGTCGTGGAAGAGGCCGGTGGCATATTTATCTAAGAATCGGGACCCAGT
GGCCAGCAGATGGCCTACATGTTTAAAGGCGGTTGCTGCAGTAGCTCTAC
TCATTAAGGATGCTGACAAACTAACTCTGAGACAGCAAATAACTGTGGTA
GCCCCTCACTCTCTTGAAAGCATTATCTGCCAGCCCCCTGATTGATGGAT
GACAAATGCCCTTATGACTCACTACCAGAGTCTGCTGCTGACTGAACAGG
TTGTGTTTGCTCCTCCTGCTATTCTCAACCCTGCCACCTTCCTGCCTAAA
ACAGACAATGCCTCACCTGTTCACTGCTGTGCAGACATTCTTTCAGAAGA
AATTGGGATTCGAAGTGATCTACGTGACCAGCCATGGCCAGGTGTTCCAA
ACTGGTATACAGACAGAAGCAGCTTCCTAATGGAATGTAAGAGGATGGTA
GGGGCGGCTGTGGCAGATGGCAAGCGAGTCGTGTGTGCTGACAGCCTGCC
AGAAGGCACTTCAGCTCTAACAGCTGATTTATTGCCCTGAC
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTTCAAGAAAAATCTCTAGAACAATGAGGTGGGGGACACATGTACAGGT
CTTACTGATTTCTGCCATTTTTCCCCACCCCCAATTGTGATGTGCTGTCG
GTCCTAAACACTTCACTTCACACTAGAAGATAAAGAATTAAGGAGAAGAA
TTATCAAATGGATTCAAAGGACTATGTCCAAACCCTAGCTCCCAGGACTT
CAGGATCTCAGGTATGACATTGTTGTTCCTCAGAGTGTGGCTTTCTGAAG
TGGACCCATCAACTTTTTTACTTTCCTTGTCTACTTCACCCTCATGGTGC
TGGTTTTTTTTTAGGACCCTCCCCCCACAGGTGGTACTCACATGAGGAAG
CAGGAGAAAGCTGCCACATCAAAAGAACAGAGGCAGGTGCCTCTGGACCA
GTGTCTTGATATGTTGCCAGCGCCGGAAATTCCCATAGACACTGTCTGGT
TTGGACAAGTAGCTTTCTGGGGAGCTGGTTCGGATGTTGGCAGGGCCACT
TTCTCCATATGCTCCTTTTGGAGGCTGTGCAGAGTTCACTGGAGACTTGA
CAGGAACCAGCTGGACAATTTGCTGTGCGCCGGGAGGTTGAGGACTCATG
ATTTATGTTTCTTCTTGGGTCTGTATAGTCCAATCCACTCGGCTATTTAT
GAAGCTGTTTGCATCACGTGCATGTCCTGAACCCCATATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_d11.g1 MSMg01no274_d11.g1 CHROMAT_FILE:
MSMg01no274_d11.g1 PHD_FILE: MSMg01no274_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:43 2005
         (290 letters)



>mm_chr13_50565228_50565917
          Length = 690

 Score =  507 bits (262), Expect = e-148
 Identities = 283/294 (96%), Gaps = 8/294 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctagaacaatgaggtgggggacacatgtacaggtcttactgatttctgccatttttc 60
           |||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||
Sbjct: 490 tctctagaacaatgaggtgggggacacatgtacaggtcttactgaagtctggcatttttc 431

                                                                       
Query: 61  cccacccccaattgtgatgtgctgtcggtcctaaacacttcacttcacactagaagataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cccacccccaattgtgatgtgctgtcggtcctaaacacttcacttcacactagaagataa 371

                                                                       
Query: 121 agaattaaggagaagaattatcaaatggattcaaaggactatgtccaaaccctagctccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agaattaaggagaagaattatcaaatggattcaaaggactatgtccaaaccctagctccc 311

                                                                       
Query: 181 aggacttcaggatctcaggtatgacattgttgttcctcagagtgtggctttctgaagtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aggacttcaggatctcaggtatgacattgttgttcctcagagtgtggctttctgaagtgg 251

                                                                 
Query: 241 acccatcaactttttt----actttccttgtctacttcaccctcatggtgctgg 290
           ||||||||||    ||    ||||||||||||||||||||||||||||||||||
Sbjct: 250 acccatcaac----ttcagcactttccttgtctacttcaccctcatggtgctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)