BAC Information

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BAC

Clone NameMSMg01-274E06
Chromosome13 (Build37)
Map Location 72,291,964 - 72,292,198
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627230, LOC100042360, Irx1
Downstream geneLOC100042828, LOC100042832, LOC100042836, Irx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274E06.T7 (MSMg01no274_e06.b1)MSMg01-274E06.TJ (MSMg01no274_e06.g1)
ACCAG413048AG413049
length741741
length of high quality
(start - end)
237 (120 - 356)359 (379 - 737)
definitionCHROMAT_FILE: MSMg01no274_e06.b1 PHD_FILE: MSMg01no274_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:47 2005CHROMAT_FILE: MSMg01no274_e06.g1 PHD_FILE: MSMg01no274_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTAATTGTCTAAATTGCAATGAGGAGTGGACAAGTGATAGGGAAAATTGG
GATTTTTGCATTCTTCACAGAACTCAAATATGTAAACAGCCCGTCATGTA
GGAGGAAGTGTGTGTGCCTCTTATTGAAAAGGGAAAAATAATTTAGAGAG
ATGAGAGGATCACAGGAGGGAAAGCTGATATTCTTCTGCTATAACGGATA
GCCCCAAGTTGTAGAGGCCATTATTTCATGCATTTTCAGAGCAAATGAAC
TTGACAGATGGCCGTGTCACCCAAACCCCCACCTACCAACTTGATTATGC
AGAATTTTTTACAATACAACACAAATCATTACTGAAGGAACCTGGTTAGT
CCACAGAGGGCTGGGGAATGCAGAAGAACAAAATTACAGTGGTGGAATTG
AACAGCAAGAATGCATTTAACATAAAGTGGGTTACTGCAAGGCAATCAGT
CATGGCTAAAGCTATTGTCTGGGCTTGCTTGCATGGTATATGAAGTAATC
CGTCATCTCCCACAGAATTTGTGCTTAGTTTATAGGCGAGAACTACAAAG
GTTGCACCAGGACATGTTTGGGTAGTCTTAAGTGCCTCAAGTGTGGGCCC
CAGAAGTGAAACAGTGAGCTCTTTAGGATGTCCCAGTGTCTCCTGTGTCA
CAAGGTGTTTCTATCTGACATGTACATGACTGTGCTGCTTG
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATATCGAATGGCTGAGA
AGCACCTGAAAAAATGTCCACCATCCTTAATCATCAGAGAAATTCAAATC
AAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAA
AATTTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTTCATTGTTGGTGGGATTGCAAGTTTGTACAACCACTCTGGAAATCT
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCGC
AATACCTTTTTTGGGCCCACCCCCACGAATGTGTCCCAACTGGTAAGAAG
GACACCTGCATGCTATGTTCATAACAACCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAATTGTG
GTACATTTACACAATGGAGTACTACTCAGCTATAAAAAAGAATGAATTTA
CGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACAATCACAAAAGAACTCAAATGATATGTACTCACTGATAAGAGC
ACTTTTTCTTCCATGATTTACTAACTAGGAATGCCCTGCTTTTTTATCTA
CAGCATTTATCCTGCTTTACATTGCTGACTACAGAGAATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_e06.b1 MSMg01no274_e06.b1 CHROMAT_FILE:
MSMg01no274_e06.b1 PHD_FILE: MSMg01no274_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:47 2005
         (237 letters)



>mm_chr13_72291764_72292400
          Length = 637

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaactcaaatatgtaaacagcccgtcatgtaggaggaagtgtgtgtgcctcttattgaaa 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 435 gaactcaaatatgtaaacagccagtcatgtaggaggaagtgtgtgtgcctcttattgaaa 376

                                                                       
Query: 61  agggaaaaataatttagagagatgagaggatcacaggagggaaagctgatattcttctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agggaaaaataatttagagagatgagaggatcacaggagggaaagctgatattcttctgc 316

                                                                       
Query: 121 tataacggatagccccaagttgtagaggccattatttcatgcattttcagagcaaatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tataacggatagccccaagttgtagaggccattatttcatgcattttcagagcaaatgaa 256

                                                                  
Query: 181 cttgacagatggccgtgtcacccaaacccccacctaccaacttgattatgcagaa 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cttgacagatggccgtgtcacccaaacccccacctaccaacttgattatgcagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)