BAC Information

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BAC

Clone NameMSMg01-274O24
Chromosome13 (Build37)
Map Location 16,988,786 - 16,989,074
singlet/doubletsinglet
Overlap gene5033411D12Rik
Upstream geneLOC665157, Inhba, LOC625181, LOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274O24.T7 (MSMg01no274_o24.b1)MSMg01-274O24.TJ (MSMg01no274_o24.g1)
ACCAG413526AG413527
length749746
length of high quality
(start - end)
321 (39 - 359)288 (70 - 357)
definitionCHROMAT_FILE: MSMg01no274_o24.b1 PHD_FILE: MSMg01no274_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:34 2005CHROMAT_FILE: MSMg01no274_o24.g1 PHD_FILE: MSMg01no274_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
TCCCAGTTGCTTCCTGTTAGACCTTCTGTGTTTGCATTCCTCTGTTTTAT
TTAAGAGTCCAGTAACTCCCTTTGTACCTTGCGAGTATGTCACCCAACTT
CCTTATTGCTTTCTGTATAAAAAGTTTGATGCTCGATTTGACAAGATACA
TTCAGATTCTACACAACCTCTCCTGTGTGCATCTGTCTGTCATTCTTCCG
ACGCTTTGCCCACCCACGACTAGAGACCCGTTCCACGCAGACAAAGGGGC
CCAGAAGGTCTGCGGCAGTAAATATAATCAGAATATACAATCAGAGGTGC
CATAACTGCTTCTTTCATCTCCCCCCCCTATATTGCAGTTTCACTGACTG
GATATTTTAGTGATACGCAGACATCAATAATGAAAGTAGTGGCTGGAGAG
CAGTTTTTTCCAGAAATTATTTGGTGTTCTTTGAAAGGGTTAGCAGGCCC
AAACTAAAAGTAGAGACACAGAACTGCCAGCAGAGGTCTGGCAAATATTA
TAAAGATATTCAATATAAGTGTTGGCCAGTGAAAAGACAGATATTGCTCC
CCATAATGGGGCCCACATACACTCTGCTTTCTCTAGGGCCAGTGCCCATT
ATACAGGATAAGCTTAGTGAAGTTTGCAAATACAGGGTAGTGAGACAACA
TCAAGCAAGCTTGAAATTTTGCTGATGTGAGCCTTGTGAACCTTTCTAG
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACATGGATTCTGGAGGAAAGCTGTTTCTGTT
CCAAATGGGGAAATCAAGACCGTATTCTTTACCTCCAGTTTTTATTTCTC
TGTATATGAAAGTATCCCTACTGTACACTCTTAATTCAGCTCACTGGCAA
CACAGCTCATTGTATATTTCCAGGTCATGGGGCCAGTGAAGGATGAATCT
TGCATGACTCTCCTGTTATCAAGAAGGGATAGTGAAAGACTCTGGAACCT
GTTGTGTATGGGTACTCTGGTAGGACTGTGGTCAAGGTACATATAGAAGT
CACTCTGGTTTTTTTTTACCCCCCCCTGCTGAACTTGGCACTTTGTAGTG
AGAAGTCAGAAAAGTTAAACAGTATGAACAATACGAAGATATTTACCATA
TCTCCTTAAAAGAATCCCCACGTGCAGAGATGTGGATGCCTCTAAGTATA
TCCTGTTATCTATGGCAAAACAGACTTAAGAGAAGTTTTAAGAAATGTTA
TTAGGTAAATACTAATATTACTATTATTCCTTACATGGAAAGTAAATGCT
GACTTACTTCTATAACTCTTCCTTGGAGAAGGCAGCTGGCTTTTTGCTTT
GCCATTTTAACTTGTACTGGGACATGAACTACCCAATTTCCCAGATCCCC
TGTTTTATGCTGCTAGACTACATTGTGTTGTAATTTTAAACCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_o24.g1 MSMg01no274_o24.g1 CHROMAT_FILE:
MSMg01no274_o24.g1 PHD_FILE: MSMg01no274_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:34 2005
         (288 letters)



>mm_chr13_16988586_16989274
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%), Gaps = 1/289 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatggattctggaggaaagctgtttctgttccaaatggggaaatcaagaccgtattctt 60
           |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct: 489 acatggattctggaggaaagctgtttctgttccaaatgtggaaatcaagaacatattctt 430

                                                                       
Query: 61  tacctccagtttttatttctctgtatatgaaagtatccctactgtacactcttaattcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tacctccagtttttatttctctgtatatgaaagtatccctactgtacactcttaattcag 370

                                                                       
Query: 121 ctcactggcaacacagctcattgtatatttccaggtcatggggccagtgaagg-atgaat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 369 ctcactggcaacacagctcattgtatatttccaggtcatggggccagtgaaggaatgaat 310

                                                                       
Query: 180 cttgcatgactctcctgttatcaagaagggatagtgaaagactctggaacctgttgtgta 239
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 309 cttgcatgactctcctgttatcaagaagggatagtgagagactctggaacctgttgtgta 250

                                                            
Query: 240 tgggtactctggtaggactgtggtcaaggtacatatagaagtcactctg 288
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgggtactctggtaggactgtggtcaaggtacatatagaagtcactctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 689
Length adjustment: 9
Effective length of query: 279
Effective length of database: 680
Effective search space:   189720
Effective search space used:   189720
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)