BAC Information

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BAC

Clone NameMSMg01-275B17
Chromosome13 (Build37)
Map Location 23,703,265 - 23,703,734
singlet/doubletsinglet
Overlap geneHist1h2be
Upstream geneV1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d
Downstream geneHist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275B17.T7 (MSMg01no275_b17.b1)MSMg01-275B17.TJ (MSMg01no275_b17.g1)
ACCAG413649AG413650
length748745
length of high quality
(start - end)		677 (72 - 748)639 (77 - 715)
definitionCHROMAT_FILE: MSMg01no275_b17.b1 PHD_FILE: MSMg01no275_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:47 2005CHROMAT_FILE: MSMg01no275_b17.g1 PHD_FILE: MSMg01no275_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTACCATACTCAACATTTCAGGTACCCTTCAGACAGCCTATGCT
CATGGGCCCAGCCGCTGTTCCCCCGTGCTCCCACAGCCTGCAGAGCAAGC
AATTCTGTAAACTCTGGCAGTCACAGAACATAAAGTCCAGGGGTCTCAAC
ACTCCACTGAAGTCATTTACACATAAAAAAGTTTAGGACACAGAACAGTG
GACAAAGCACTTGCATAGTGGTTTGCAAGCACTGTGAACTTAAGTTATAT
TCTCCAGAACATAAAAAAAGAAAAGCTGTGGGTGATGCCATCCTGGCCTA
CTTGCTGGTGAATTCTAGACCAATGAGAGACCCTGTTCAAAAGATTAAAT
TAAACTAAAAATAAAAAGGTGGACAGTGTTTAAGAAAGAATACCCAAAGT
CAACCTAGTCAAACGTACACACACACACACACACACACACACACTCACAC
ACACACTCACACACACACACACACTCACACACACACACACACTCACACAC
ACTCACACACACACACTCACACACACACACACTCACACACACTCACACTC
ACACACACACACACACACACACAATTTTTTATTAAAATAAAAAAGACCAG
TTTGAAGAAGATTTTTTTTTCTCCTCTTCCTACTGTTTCTGGAGACTCAG
CATGTAGAGAAAGAGAGAAGATGCNGGAAGAAAAAAAGAGCATCTATC

CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTG
CTAAACACATGANACTCAAGAAGAATGAAGACTGAAGTGTGGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_b17.b1 MSMg01no275_b17.b1 CHROMAT_FILE:
MSMg01no275_b17.b1 PHD_FILE: MSMg01no275_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:47 2005
         (677 letters)



>mm_chr13_23703265_23704346
          Length = 1082

 Score =  785 bits (406), Expect = 0.0
 Identities = 454/476 (95%), Gaps = 11/476 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcaggtacccttcagacagcctatgctcatgggcccagccgctgttcccccgtgctcc 60
           ||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 470 tttcaggcacccttcagacagcctatgctcatgggcccagccgctgctccctcgtgctcc 411

                                                                       
Query: 61  cacagcctgcagagcaagcaattctgtaaactctggcagtcacagaacataaagtccagg 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cacagcctggagagcaagcaattctgtaaactctggcagtcacagaacataaagtccagg 351

                                                                       
Query: 121 ggtctcaacactccactgaagtcatttacacataaaaaagtttaggacacagaacagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ggtctcaacactccactgaagtcatttacacataaaaaagtttaggacacagaacagtgg 291

                                                                       
Query: 181 acaaagcac-----ttgcatagtggtttgcaagcactgtgaacttaagttatattctcca 235
           |||||||||     ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 acaaagcacttgctttgcatagtggtttgcaagcactgtgaacttaagttatattctcca 231

                                                                       
Query: 236 gaacataaaaaaagaaaagctgtgggtgatgccatcctggcctacttgctggtgaattct 295
           |||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 230 gaacttaaaaaaagaaaagctgtgagtgatgccgtcctggcctacttgctggtgaattct 171

                                                                       
Query: 296 agaccaatgagagaccctgttcaaaagattaaattaaactaaaaataaaaaggtggacag 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 agaccaatgagagaccctgttcaaaagattaaattaaactaaaaataaaaaggtggacag 111

                                                                       
Query: 356 tgtttaagaaagaatacccaaagtcaacctagtcaaacgtacacacacacacacacacac 415
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 tgtttaataaagaatacccaaagtcaacctagtcaaacgtacacacacacacacacacac 51

                                                                   
Query: 416 acacacactcacacacacactcacacacacacacacactcacacacacacacacac 471
           ||||||||      |||||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 50  acacacac------acacactcacacacactcactcacacacacacacacacacac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1082
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1072
Effective search space:   715024
Effective search space used:   715024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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