BAC Information

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BAC

Clone NameMSMg01-275M06
Chromosome13 (Build37)
Map Location 67,904,164 - 67,904,687
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1
Downstream geneLOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275M06.T7 (MSMg01no275_m06.b1)MSMg01-275M06.TJ (MSMg01no275_m06.g1)
ACCAG414126AG414127
length731735
length of high quality
(start - end)
528 (48 - 575)636 (74 - 709)
definitionCHROMAT_FILE: MSMg01no275_m06.b1 PHD_FILE: MSMg01no275_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:33 2005CHROMAT_FILE: MSMg01no275_m06.g1 PHD_FILE: MSMg01no275_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCGTACCTAATATAACAGCCCCAATGGTTATCACATTTCAGGCG
CTTAGTAGGATGAATAATGCTACTCAAATGATGTGATTAAAATTTCCCAC
TAACCGCAAAGCAGCTGGTGTAAGTGTCCTGGCTGCTCGGACATCTTGTC
ATGTGCACAGTAATGATTTCCAATGAGATGTGAGTCACTTGCTCAAAATG
CAGCAGCAATCCTCAGAAAGTAGTAATTGCTGGGCAGAGAAACACTCGTT
AGTTGCCCCAAGACAGGGTGGGGAATTTAATGAATATATCCATCAACTTT
CCACAGTCTTTCTCATTCTTTGAGTAGAGCCTCACTCATCTTTGACTAGA
TAATTGACAGATTAATTTTTCTTGAGTAATCTGTGCAGCACAGAATCCTG
GGACACCAGTATGGGCAGAGACACCCTAGTTGGACCCCATGTAAGCTCTC
CTGGGATTAACAAGATGTTATGCAAGAAAGACAATTTCTCTGTTGAGTGG
ATGGAGGTGGGAGTGAGTTGAAGTGNNGTGNNNTNNNNTNNNNNNTTTTT
TTTTTTTTTNTTTTTTTTTTTTTGTTTTTTTTTNTNNNTTTTTTTTTTTT
NTTTTTTTTTTNNTTTTTTTTTNTTTNTTTTTTTTTTTTTTTTTTTTTTT
NTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTAAAACTATTAACGGTGTGTCAG
TAAACCTGAATGTCATATTGAGGGACAAAGGAAAATTTAAGAGAGTTCAG
ACAATGCTGATAACGTGAACACAAAGAAGAAAAGCACGTGAAGAGACAAC
AATGTACAGAGTCTGGCAGATTAGAGAGCAATGTACAGATCGTGACAGAG
TACAGAGCAATGTACAGAGCCTGGCAGATTACAGATGAACAGAGCCATTT
CCCCCTTCCCTTTCAGACTTTCCAGCCCCACCCTGCCATTTCTCATCACA
CCAAGTTATTTCTCACATCTGACAAGGAGTCCAAATTTTGGACACAACAC
ATACTCAGAACTGTTGAGGTATTATTGTCTAGTGATTTTTAATCTTTAGT
GTAAAATCCTATTTATTTGGATTGTGCAAACACTGGTTTATACCAACTAC
AAGATTATTTTGTGCTTTTATAGTCAGGTATTGTCGCATTCAGGTCACAA
AGGTGTCTATTAGAAAATCTTATTTGAATCAGGGCATCCACGAGTCGAAC
AATTCATTCCAAAGGAACAGGAACTAACATCCCACACAACAGTTTGCCCT
CCCTCACAGGATTCTTGCTCCTTGGACACTAGGAACTTTAGGAAGCTTTT
TGAGCTCAAACTATGAGTAGTCTCCAGGACATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_m06.b1 MSMg01no275_m06.b1 CHROMAT_FILE:
MSMg01no275_m06.b1 PHD_FILE: MSMg01no275_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:33 2005
         (528 letters)



>mm_chr13_67903960_67904887
          Length = 928

 Score = 1013 bits (524), Expect = 0.0
 Identities = 524/524 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccgtacctaatataacagccccaatggttatcacatttcaggcgcttagtaggat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gaattccgtacctaatataacagccccaatggttatcacatttcaggcgcttagtaggat 669

                                                                       
Query: 65  gaataatgctactcaaatgatgtgattaaaatttcccactaaccgcaaagcagctggtgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaataatgctactcaaatgatgtgattaaaatttcccactaaccgcaaagcagctggtgt 609

                                                                       
Query: 125 aagtgtcctggctgctcggacatcttgtcatgtgcacagtaatgatttccaatgagatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aagtgtcctggctgctcggacatcttgtcatgtgcacagtaatgatttccaatgagatgt 549

                                                                       
Query: 185 gagtcacttgctcaaaatgcagcagcaatcctcagaaagtagtaattgctgggcagagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gagtcacttgctcaaaatgcagcagcaatcctcagaaagtagtaattgctgggcagagaa 489

                                                                       
Query: 245 acactcgttagttgccccaagacagggtggggaatttaatgaatatatccatcaactttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 acactcgttagttgccccaagacagggtggggaatttaatgaatatatccatcaactttc 429

                                                                       
Query: 305 cacagtctttctcattctttgagtagagcctcactcatctttgactagataattgacaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cacagtctttctcattctttgagtagagcctcactcatctttgactagataattgacaga 369

                                                                       
Query: 365 ttaatttttcttgagtaatctgtgcagcacagaatcctgggacaccagtatgggcagaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttaatttttcttgagtaatctgtgcagcacagaatcctgggacaccagtatgggcagaga 309

                                                                       
Query: 425 caccctagttggaccccatgtaagctctcctgggattaacaagatgttatgcaagaaaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 caccctagttggaccccatgtaagctctcctgggattaacaagatgttatgcaagaaaga 249

                                                       
Query: 485 caatttctctgttgagtggatggaggtgggagtgagttgaagtg 528
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 caatttctctgttgagtggatggaggtgggagtgagttgaagtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)