Query= MSMg01no276_i02.b1 MSMg01no276_i02.b1 CHROMAT_FILE:
MSMg01no276_i02.b1 PHD_FILE: MSMg01no276_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:27 2005
(239 letters)
>mm_chr13_22053592_22054233
Length = 642
Score = 424 bits (219), Expect = e-123
Identities = 234/239 (97%), Gaps = 3/239 (1%)
Strand = Plus / Plus
Query: 1 gtacagggggccatgacaattccctctgtattccaattttactctt-ctgttgccaa-gt 58
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||
Sbjct: 201 gtacagggggccatgacaattccctctgtattccaattttagtctttctgttgccaaagt 260
Query: 59 gaaaaggttttaagattttacttttatatgtgtgtatctgtatgagtgaatgacatatgt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaggttttaagattttacttttatatgtgtgtatctgtatgagtgaatgacatatgt 320
Query: 119 gtgtaggtgacctagaag-ccagaaaagggtctggacaggtagctgtgtgctgtccacag 177
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gtgtaggtgacctagaaggccagaaaagggtctggacaggtagctgtgtgctgcccacag 380
Query: 178 tgggtcctgcaccccagccctggaccgtactttagatgattaggtgaggacatcctctg 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggtcctgcaccccagccctggaccgtactttagatgattaggtgaggacatcctctg 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 642
Length adjustment: 9
Effective length of query: 230
Effective length of database: 633
Effective search space: 145590
Effective search space used: 145590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no276_i02.g1 MSMg01no276_i02.g1 CHROMAT_FILE:
MSMg01no276_i02.g1 PHD_FILE: MSMg01no276_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:27 2005
(667 letters)
>mm_chr13_23283505_23284571
Length = 1067
Score = 1143 bits (591), Expect = 0.0
Identities = 648/673 (96%), Gaps = 14/673 (2%)
Strand = Plus / Plus
Query: 1 tttataggcatttgtccatggccaagagcttcatcaggtgaaaggacacagagagagaga 60
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 203 tttataggcatttgtccacggccaagagcttcatcaggtgaaagga----gagagagaga 258
Query: 61 gagagagagagagagagagagagagagag-agagagagcaaacaaaacaaagtgttagaa 119
||||||||||||||||||||||||||||| | | | |||||||||||| ||||||||
Sbjct: 259 gagagagagagagagagagagagagagagcaaaca----aaacaaaacaaaatgttagaa 314
Query: 120 aaattcttagctcaaatacatttatgctgtgcatggttcccagaagtaggaatggtaaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aaattcttagctcaaatacatttatgctgtgcatggttcccagaagtaggaatggtaaat 374
Query: 180 acacaaatgacaagagaaagggaaagagagagagaga--ataggtttcataaaagcagtt 237
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 375 acacaaatgacaagagaaagggaaagagagagagagagaataggtttcataaaagcagtt 434
Query: 238 gtcccctgtccagaacacattagcaaaagagaaggaaaaggatttcagagctctcctagg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gtcccctgtccagaacacattagcaaaagagaaggaaaaggatttcagagctctcctagg 494
Query: 298 gacaggaggaaatcagccgacatcctgcttcctctctggctcctactggagatatccata 357
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 495 gacaggaggaaatgagccgacatcctgcttcctctctggctcctactggagatatcccta 554
Query: 358 gttctggttacatcaagttctcttccctctctgtgtgttgtctgtctttggtgtaccaat 417
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 555 gttctggttacatcaagttctcttccctctctgtgtgttgtctatctttggtgcaccaat 614
Query: 418 ctgtccacatgtcaatttatgtctctttttgttttgttctttgaatgactgttgttttat 477
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 615 ctgtccacatgtcaatttatgtctctttttgttttgttgtttgaatgactgttgttttat 674
Query: 478 gtttcatgttcagaagaaaaaatta---agactttatctgctggctatccaccccttgat 534
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 675 gtttcatgttcagaagaaaaaattattaagactttatctgctggctatccaccccttgat 734
Query: 535 ttagtttaacttgtttagaaggcagtctctacttgcacagcaaaccctgactaacgaagt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ttagtttaacttgtttagaaggcagtctctacttgcacagcaaaccctgactaacgaagt 794
Query: 595 tttttggctcttggctccagagaccttgggattacctgggaagcagcattattataatag 654
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 795 tttttggctcttgtctccagagaccttgggattacctgggaagcagcatcattataatag 854
Query: 655 atctatctaagtg 667
|||||||||||||
Sbjct: 855 atctatctaagtg 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
