BAC Information

Click to search

BAC

Clone NameMSMg01-277C14
Chromosome13 (Build37)
Map Location 46,150,351 - 46,150,649
singlet/doubletsinglet
Overlap genenone
Upstream geneHsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr, Atxn1, 5033430I15Rik
Downstream geneENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277C14.T7 (MSMg01no277_c14.b1)MSMg01-277C14.TJ (MSMg01no277_c14.g1)
ACCAG415140AG415141
length746773
length of high quality
(start - end)
308 (439 - 746)239 (130 - 368)
definitionCHROMAT_FILE: MSMg01no277_c14.b1 PHD_FILE: MSMg01no277_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:15 2005CHROMAT_FILE: MSMg01no277_c14.g1 PHD_FILE: MSMg01no277_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCCTTCTTCTCCCCAAATAGCTCCTGGGAGCTCCTGGAGCATG
AATATGTAAGTGTCGAATTTACTCCCGTTGCATACAGCTTGTCAGCACCC
ACAACTCGCTTATGTAATAAATCGTAGTGAGTCTGTACAAAGGCAATGCT
ACAGTCTCCATCACCTTGCATGCAAACTTCCCAGCTCAGGTGAACTAATA
CTTTAAAGTTAGATTTCATCCCCTACTAACGCATAGGATAGGACTGAGTC
TGGCTTATTCTGTGGCAGTACGTCATTAGGAAATTCTAAGAGGAGGTTAA
GATTTGGGTCATCTGTTTTTTAGTTGCCTCACCCATCAGTCTTTCACCAA
AGAGCACCTTTGTGGGTGGGGCTGATGTGGAACGAGACTGGGAGCAAGCC
AATGACTCTTCATTTGCATAGCAAGCTTATTCATCCACTTGAGATGGATT
GGCTGGAGAACGAAGCCCCTCCTATCAAGCCAGGAAAAAATGCTATTCAC
CTTCACAGGCAATTAGAAACAGTCCCCCTCTTCAGCTAGGCTACAATGCT
GCCAGACCCTCCATGCTGCCGGGTTAAATGTGGGAGCGGACTACACAGAG
ATTCTAGAACCTAGGGACAGCACACTGACATGCCTGCCTATACTCTGCAA
AGCAAGCAGATGGAGCGACTCCCCAGCAAACCTCAACACCTGAAAN
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTTGCTTCAATCAATCCTTCC
AATCTGGTCTCAGGTTACCATTGACCGCCCCACAGAGCTGGCTATAGTGC
AGAGTCTCATGCAGCAGTGGCTCAAGTGTCCATGCAAGCCAAAGGACATG
AGAATGGATGGCTGAAAACCACAGAAAAGCCAGGCCCCACGGTACATCTA
CAACTCCTGTGCTAGGGGAACTGCATCAGGCAGCTAGCTCCCTGGGACTT
GCTGGCAAGGAATTCTAGCTCCCTCATCCAGTGAAAAACTCTGCCTTGAA
AAATATCTGCTATCAATCTCTGGCCTCCACGCTCCATAGGAATGAACACA
CAGGGAGGTGGGGTGGGGGAGAGATGGGGAGACAGAAAGAAAGGCNGAGA
GATACTGAGGTTGATGCTCAAGCTCCACCCCAGATTGATGGAGTCAGAAT
GCTGTGTACAGGCTCAAATGATTGGCTTTGACAAGGAGCCCCTAATGATG
TATTGTTACTCCCATAGTTCTATGCATCCCTCAGCCCTCATCGAATAAGC
TTCTATATGGATTGTACCACACACTCACATATTCCCTCATACCTTTTCTC
ATATCACCTATCTTCCTCCACCCCCTACACGAAACTTTCGATTAATACTT
TACATATTGCCAGCACTGATTAAATGACCAAATGCCCCATCTTTCTTTTT
TTCTTACCCTACATATTACATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_c14.b1 MSMg01no277_c14.b1 CHROMAT_FILE:
MSMg01no277_c14.b1 PHD_FILE: MSMg01no277_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:15 2005
         (308 letters)



>mm_chr13_46150144_46150850
          Length = 707

 Score =  526 bits (272), Expect = e-154
 Identities = 293/300 (97%), Gaps = 1/300 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   aagccaatgactcttcatttgcatagcaagcttattcatccacttgagatggattggctg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aagccaatgactcttcatttgcatagcaagcttattcatccacttgagatggattggctg 447

                                                                       
Query: 68  gagaacgaagcccctcctatcaagccaggaaaaaatgctattcaccttcacaggcaatta 127
           ||||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||| 
Sbjct: 446 gagaacgaagcccctccgatcaagccagg-aaagatgctgttcaccttcacaggcaattt 388

                                                                       
Query: 128 gaaacagtccccctcttcagctaggctacaatgctgccagaccctccatgctgccgggtt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaaacagtccccctcttcagctaggctacaatgctgccagaccctccatgctgccgggtt 328

                                                                       
Query: 188 aaatgtgggagcggactacacagagattctagaacctagggacagcacactgacatgcct 247
           |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 327 aaatgtgggaacggactacacagagattctagaacctagggacagcacaccgacatgcct 268

                                                                       
Query: 248 gcctatactctgcaaagcaagcagatggagcgactccccagcaaacctcaacacctgaaa 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gcctatactctgcaaagcaagcagatggagcgactccccagcaaacctcaacacctgaaa 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 707
Length adjustment: 9
Effective length of query: 299
Effective length of database: 698
Effective search space:   208702
Effective search space used:   208702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)