Query= MSMg01no277_m03.b1 MSMg01no277_m03.b1 CHROMAT_FILE:
MSMg01no277_m03.b1 PHD_FILE: MSMg01no277_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:57 2005
(236 letters)
>mm_chr13_58877407_58878042
Length = 636
Score = 418 bits (216), Expect = e-121
Identities = 231/236 (97%)
Strand = Plus / Minus
Query: 1 gagccttggtgatggcttgctggaagattgcctggaaagatatggaatatgcattaccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gagccttggtgatggcttgctggaagattgcctggaaagatatggaatatgcattaccca 377
Query: 61 cattcctcctctggtcatcatatcagaagaaaggacatgagagcctcttaaacccactgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cattcctcctctggtcatcatatcagaagaaaggacatgagagcctcttaaacccactgg 317
Query: 121 gggatataatgcaggggtgtagaaggaagtacaaaccaaagatcaaggtcagatgcactc 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gggatataatgcaggggtgtggaaggaagtacaaaccaaagatcaaggtcagatgcactc 257
Query: 181 gcctgccgttctagtgtatacatcaacaaccccgttaaaacagaggtcccattgct 236
|||||||||||||| | | ||||||||||||| |||||||||||||||||||||||
Sbjct: 256 gcctgccgttctagcggagacatcaacaacccggttaaaacagaggtcccattgct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space: 142329
Effective search space used: 142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no277_m03.g1 MSMg01no277_m03.g1 CHROMAT_FILE:
MSMg01no277_m03.g1 PHD_FILE: MSMg01no277_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:57 2005
(599 letters)
>mm_chr13_58719195_58720193
Length = 999
Score = 1098 bits (568), Expect = 0.0
Identities = 592/600 (98%), Gaps = 2/600 (0%)
Strand = Plus / Plus
Query: 1 cgagcgggtgctaacactcgtggctggaactttatgacaagagcatgtgcacagatgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 cgagcgggtgctaacactcgtggctggaactttatgacaagagcatgtgcagagatgctg 260
Query: 61 agaaccttctcctaagtgacacacttgctcctaatcgaagtaaggagagtggacatttta 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 agaaccttctcctaagtgacacacttgctcctaatcgaagtaaggagagcggacatttta 320
Query: 121 tgggcaaacccagaagataccactggaatcaaatatcactcaaaagaggaccaaggaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggcaaacccagaagataccactggaatcaaatatcactcaaaagaggaccaaggaaga 380
Query: 181 tgctgctccttcagacaggacatgctgaggacatagcatatcctctgatacttcttccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctgctccttcagacaggacatgctgaggacatagcatatcctctgatacttcttccaa 440
Query: 241 caggacaccctgagtgtaatcacagagaaagactgagcccagttgagggacatctgtcc- 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 caggacaccctgagtgtaatcacagagaaagactgagcccagttgagggacatctg-cct 499
Query: 300 ggacttatgtccttcctgtgtaagatcattaaagacaaagaaggcagatggacgcttcca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggacttatgtccttcctgtgtaagatcattaaagacaaagaaggcagatggacgcttcca 559
Query: 360 gctcagaggacagtaaccagatatgatacatagatgtaatgccccctccttgtgggggtc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctcagaggacagtaaccagatatgatacatagatgtaatgccccctccttgtgggggtc 619
Query: 420 ctagagcaaagaaaatacctgttagacaacgtggaactggtgaggtggctcagagttcct 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctagagcaaagaaaataactgttagacaacgtggaactggtgaggtggctcagagttcct 679
Query: 480 tcgcatgctgtgactggaacctgaagcagaaactctgtctccaggccttccaggcaccac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcgcatgctgtgactggaacctgaagcagaaactctgtctccaggccttccaggcaccac 739
Query: 540 cctttcctgaggctccaagcttgcaggcacattcccgggactgtgagccccgctctgaac 599
||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 740 cctttcctgaggctctaagcttgcaggcacattcctggcactgtgagccccgctctgaac 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
