BAC Information

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BAC

Clone NameMSMg01-277P21
Chromosome13 (Build37)
Map Location 42,434,429 - 42,609,087
singlet/doubletdoublet
Overlap geneHn1-ps4
Upstream geneNedd9, EG621976, EG328231, 9530008L14Rik, LOC100039272, Hivep1, Edn1
Downstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277P21.T7 (MSMg01no277_p21.b1)MSMg01-277P21.TJ (MSMg01no277_p21.g1)
ACCAG415736AG415737
length730738
length of high quality
(start - end)
295 (72 - 366)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no277_p21.b1 PHD_FILE: MSMg01no277_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:13 2005CHROMAT_FILE: MSMg01no277_p21.g1 PHD_FILE: MSMg01no277_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,608,792 - 42,609,087)(42,434,429 - 42,434,721)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAGAAGAGTACCAACACCACAATGACCTATTAAGAAGTCGATGCC
AAGGATCCAGGAAAAGGCTGTTTCCCTGGACTCTGCTATAAAGCCAGGAA
GGGAGGGGTGGCTAAACCTTACAGGTTTGATTTAATGACCATGCTGAGTA
GCTTATGTGAAAAAGTGGTGGGAAAATTTTTAATGTGGTGTATAATTTAT
TATCACGTGATTAGATTTGATGTCAGGAAGCCAACTCCAGAAGCAGTAGT
AGCTCCTGACTGAGTCTGTTAGAAAGAGTGTTACAGGCACTCTTGGTATT
CTTCTAAATCCTCTTGTTGTATTACATGCGCCCCCCGAGGTGATGCTCTC
TGCTGCTATCTGTTCATCTGCTCCAAGGGTGATAAAGAAATTACTAGGCA
GAATTTTTAGGTGCCTGTTTGTTTTCTAATGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTTTTTTTNNTTTTTTTTTNTTTTNTTN
TTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTNNTNNTTTTTTTTTGNTT
TTGTGGNTTTTTTTTTNTGTTTTTTGTGTTTGTTTTTGTGTTNTTTTGTT
TTGNTTGGTTTTTGGTTTTTTTTTTTTTTTNTNTGTGTTTTTTTTTTTGT
GTGTTTTTTGTGTTTGTTTTGTTTTTTGNT
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATCTTCTGGGAGAACGAAATTC
AATGAACCAACAAAGGCAGCAATGGGCTCTTATCGGAGCCCTTCAAGGCT
CTTCAAAACACTGTACTCACAGTGGAAACGCAAATCCCTCTGACCCTTCA
GGGTTTATAAGGGAAGTTCTGAGCTTCTCAAGGGTCAACCAGGCAGAGAT
TCTTGTTGGCTCCCTTGTCAAAGTTTGAGAGGGTGAGCACAGTGAAGAAA
GGCCCCACAGGTCACCTCCCCTGGGCAGGGAATGCACAGCTGGCCTGTGC
TGCAGATAGCACAGGGCATGAGTGNGTGTGCCCGTCTGCCCGCGTGTGTG
TGTGTGTGTGTGTGTGTGTGTNNNNNNNNNAAAAAAAAAAAAAAAAANNN
NNGGGGGGGGGGGGGNTTTTNNNTTTTTNNTTTTGTTTGTGNTGTTTTGT
TTTGTTTTTTTTTTTTTGNGTTTTGTGTGTGTTGTTTTTTGGTGTTTTTT
GTTTTTTTTGTGTTTGTGTTTGTGTGTGTTGTTTTTTGTTTTTTGTTTTT
TTTTTTTTTTGTTTTTGTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTGTGTGTGTTGGGTTTTTTGGTTTTGTTTTGGTGTTTTTTTTTTTTG
TTTTTTTTTGGTTTTTTTGTTTTTGTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_p21.b1 MSMg01no277_p21.b1 CHROMAT_FILE:
MSMg01no277_p21.b1 PHD_FILE: MSMg01no277_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:13 2005
         (295 letters)



>mm_chr13_42608592_42609287
          Length = 696

 Score =  534 bits (276), Expect = e-156
 Identities = 291/296 (98%), Gaps = 1/296 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacaatgacctattaagaagtcgatgccaaggatccaggaaaaggctgtttccctggac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 496 ccacaatgacctattaagaagtcgatgccaaggatccaggaaaaggctgttttcttggac 437

                                                                       
Query: 61  tctgctataaagccaggaagggaggggtggctaaaccttacaggtttgatttaatgacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tctgctataaagccaggaagggaggggtggctaaaccttacaggtttgatttaatgacca 377

                                                                       
Query: 121 tgctgagtagcttatgtgaaaaagtggtgggaaaatttttaatgtggtgtat-aatttat 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 376 tgctgagtagcttatgtgaaaaagtggtgggaaaatttttaatgtggtgtattaatttat 317

                                                                       
Query: 180 tatcacgtgattagatttgatgtcaggaagccaactccagaagcagtagtagctcctgac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tatcacgtgattagatttgatgtcaggaagccaactccagaagcagtagtagctcctgac 257

                                                                   
Query: 240 tgagtctgttagaaagagtgttacaggcactcttggtattcttctaaatcctcttg 295
           |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 256 tgagtctgttagaaagagtgttacaggctctcttggtattcatctaaatcctcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 696
Length adjustment: 9
Effective length of query: 286
Effective length of database: 687
Effective search space:   196482
Effective search space used:   196482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no277_p21.g1 MSMg01no277_p21.g1 CHROMAT_FILE:
MSMg01no277_p21.g1 PHD_FILE: MSMg01no277_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:13 2005
         (293 letters)



>mm_chr13_42434229_42434921
          Length = 693

 Score =  559 bits (289), Expect = e-164
 Identities = 292/293 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatcttctgggagaacgaaattcaatgaaccaacaaaggcagcaatgggctcttatcgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ttatcttctgggagaacgaaattcaatgaaccaacaaaggcagcaatgggctattatcgg 260

                                                                       
Query: 61  agcccttcaaggctcttcaaaacactgtactcacagtggaaacgcaaatccctctgaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcccttcaaggctcttcaaaacactgtactcacagtggaaacgcaaatccctctgaccc 320

                                                                       
Query: 121 ttcagggtttataagggaagttctgagcttctcaagggtcaaccaggcagagattcttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagggtttataagggaagttctgagcttctcaagggtcaaccaggcagagattcttgt 380

                                                                       
Query: 181 tggctcccttgtcaaagtttgagagggtgagcacagtgaagaaaggccccacaggtcacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggctcccttgtcaaagtttgagagggtgagcacagtgaagaaaggccccacaggtcacc 440

                                                                
Query: 241 tcccctgggcagggaatgcacagctggcctgtgctgcagatagcacagggcat 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccctgggcagggaatgcacagctggcctgtgctgcagatagcacagggcat 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)