BAC Information

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BAC

Clone NameMSMg01-278M22
Chromosome13 (Build37)
Map Location 69,213,358 - 69,213,462
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2, LOC666205
Downstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278M22.T7 (MSMg01no278_m22.b1)MSMg01-278M22.TJ (MSMg01no278_m22.g1)
ACCAG416339AG416340
length810763
length of high quality
(start - end)
105 (197 - 301)---
definitionCHROMAT_FILE: MSMg01no278_m22.b1 PHD_FILE: MSMg01no278_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:15 2005CHROMAT_FILE: MSMg01no278_m22.g1 PHD_FILE: MSMg01no278_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTNNTTTTTTNNNTNNNCCTCCCCCCCCCCTNGGGTTNCNGGAGGG
NNNNNNNNTTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTGTTTCACAAGATGGGTAGNCTCTCTCCAGGAT
GAGGATTTATTGGTTGTCTAATATTTTATGCCACAAAGAGGGGATAACAC
ATTAACAACAAAAATGGACCCCGTAAGTTGTGTTTACATATTTGTGCAAG
TGAGTGCATGTGTGCATGCATGCGTGCCTGTATGCCCAAGAGTGGAGTGG
TCTGGGAAGGGGCTGTGAGAGAAGAAAGGGAGGGGGGATTCTACTTTCCA
AGTAATAATATATTATAAAAAATATGAATTTTTTTTATTTTTTTCAAAGA
TAAAATGCACAAGAGGGGGGGGGATGTTTTGGATANTTTTTCCCCCCCCC
CCCCCCCTCGGAAAGATAATTTTTTTGTTGGAATGAGCCGGGGCAACTTT
TTTTTGGTAAAATATATAAAAAAAAAAAAAAACGCCCCTTAGGGTGGGGG
GGGGGGGGGGGGGCCAATTTTGGTTATATTTCCCAATAATAAGGAAAAAA
AAAGCTTTTTTGGAAAACCCCAGCCTAAAAAAAATATTTTTACCAAAAAA
CTCTCTCATTTGTTACATTATTAATACCCCCGCCCACCACAAATAATTTG
TACACCCCAATTTGTTTTTGTGTTTATTCTTTCGGGGAGCTCTTCTGTGA
ACTTTTGTTTTGTTTTATTTATTCAAAGGGTAGGGGGGTTATATTATTGT
GGAATATTAT
TTCTTTTTTTTTTNTCTTTTTTTNNTTTCCTACTAGGGCGGAATTAATCN
NNNNNNCCTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGGAGTGGTAG
AATCGTCCCTCAGGACTGAGGTTGTTCACCTTACGAATAGGAATCTCTGC
TCCCTATCCCAGAGGCATAGAAGATAGTTGGATCCCGTGTATTAAAATGA
GAGCACTTCTCCTGTGGACTCCTGGGCTGCTGTCTACGATACCATTAACA
AAAGCCTTGGGATGAGTCTAAGTAGCGCCGGCACCTTGGCCTGCCACTGT
AGACAAGACATCTGTGACACTGCCTTTTATTATAAGAGCAAGAAAGGGAA
AGTCAAACACATATTGGATTAGTTCCTGAAACAAGTCCGGGGGTTGTAAT
ATAGGATGTTGTCTGGGTCGCTGTGAAAAAAAATTAAGAATGAATGCTGA
GGGTGCGTGTGTGTTCACTGGCAGACCTTTGAATCCCGACAGCTGAGATG
CCTGCACATGGCAATAGGTAGAGTTCAGGATTTGAATCACTCCGAGCTGC
AGCTCGGCAAACATTACAGGGCCTGTGCCGTTCCATCTAGGGTTTCGAAA
ACCGAAGCTTGAGTGATTCTCATGTTTTCCCCAGTAAGATCAGATATGCT
ACGCGGTTCTTCTTGCTCTGACTTATGCGTTGATTATGAACAATATAGAT
GTGAAGTTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_m22.b1 MSMg01no278_m22.b1 CHROMAT_FILE:
MSMg01no278_m22.b1 PHD_FILE: MSMg01no278_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:15 2005
         (105 letters)



>mm_chr13_69213158_69213662
          Length = 505

 Score =  203 bits (105), Expect = 2e-57
 Identities = 105/105 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacattaacaacaaaaatggaccccgtaagttgtgtttacatatttgtgcaagtgagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacattaacaacaaaaatggaccccgtaagttgtgtttacatatttgtgcaagtgagtg 260

                                                        
Query: 61  catgtgtgcatgcatgcgtgcctgtatgcccaagagtggagtggt 105
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtgtgcatgcatgcgtgcctgtatgcccaagagtggagtggt 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 505
Length adjustment: 8
Effective length of query: 97
Effective length of database: 497
Effective search space:    48209
Effective search space used:    48209
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)