BAC Information

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BAC

Clone NameMSMg01-279C10
Chromosome13 (Build37)
Map Location 70,639,768 - 70,640,074
singlet/doubletsinglet
Overlap genenone
Upstream genePols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik, EG633042
Downstream geneBC018507, EG620473, Adamts16, 8030423J24Rik, LOC627230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279C10.T7 (MSMg01no279_c10.b1)MSMg01-279C10.TJ (MSMg01no279_c10.g1)
ACCAG416589AG416590
length730732
length of high quality
(start - end)
313 (44 - 356)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no279_c10.b1 PHD_FILE: MSMg01no279_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:40 2005CHROMAT_FILE: MSMg01no279_c10.g1 PHD_FILE: MSMg01no279_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACACAGAGCTCGGTGCATGCTGAGCAAACCCTCTACCACTGAGTTT
CATCACAAGCTCAATGTGTTAATATGTATTTTAAATGCCTCTTCCTGGCA
GGCTGTTTCGACTTTCTTTTTAAGATATTCTCAGTTACAGGCCAGCCCTC
TCCTTAGCCTTTTGTATTCCCTGAAAACTGGCAATAGAACTCTGATGTTC
TGAGTTCTAGCAGGCAGAATAATGGACACCTAAAGATATCCACTTCTTCA
TTCCAGACCCTCTGAGAGTGTCCCCTCCCTCGGAAAGGGATTGGACAGGT
ATATGTGTTTCAAGGGCCTTACCCAGATTTTTCCTGTTACTCAGGCAGAC
CCAGCTGACCACCAGGACCTTCTGTTGTAACAGGGAGACAAGAATCAGGG
TCAGAAGAAGCTGCAGTGTGAGCAGGGGTCCTGCAGGGAGCTTCTGAAAG
TTGGGAAAGCAAGGGAAAGGGTTTTTGTTCCAGAATCTTCAGAGAGCCAA
GCAGCATGCTGCCATGTTTTTAGCTCCATGTGATCCATTTTAAAGTTCTT
TTATTATTTTACTTCTCCCTCCTTGTGTATGCCTGTGCGCATGCACGTGC
ATACACACACACACACACACACACACACACACACACACACACACACACAC
GTAAGAATGTGCACACACTCATGATTCATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCATGTGGTCTAGGATGACCTTG
AACTTGCAATTCTCCTGCTTCTTTCTGCCTCTATCTTCTTTTCCCTGTTC
TAGAATTACAGGAATGCACAGCCATGCTCAATTTCATGGCACACTGTGCT
TTGCATACAAAGTTTCACACATGAGAGGGAAGTGCTCTACCAACTGAGCT
ATGGAGCAGCTGAGCTCTGAGAGATCCCCTCATAATTTCCCCAAAGCGTA
ACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGT
CTTCCCTTGTTATTGTGTACCCACAATGCCGCAAAACTTCCATGCCTAAG
CGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTG
CTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCAAGCCAACATGTTA
GTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTG
CTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGACTTTTCAAGTC
TCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTT
GTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAACCCATGGC
TCCTTTGCCGACGCTGAATAAATTTTAGGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_c10.b1 MSMg01no279_c10.b1 CHROMAT_FILE:
MSMg01no279_c10.b1 PHD_FILE: MSMg01no279_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:40 2005
         (313 letters)



>mm_chr13_70639499_70640211
          Length = 713

 Score =  532 bits (275), Expect = e-155
 Identities = 299/307 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccacacagagctcggtgcatgctgagcaaaccctctaccactgagtttcatcac 63
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ggaattccacatagagcttggtgcatgctgagcaaaccctctaccactgagtttcatcac 517

                                                                       
Query: 64  aagctcaatgtgttaatatgtattttaaatgcctcttcctggcaggctgtttcgactttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 516 aagctcaatgtgttaatatgtattttaaatgcctcttcctggcaggctgtttcaactttc 457

                                                                       
Query: 124 tttttaagatattctcagttacaggccagccctctccttagccttttgtattccctgaaa 183
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 456 tttttaagatattctcagttacaggtcagccctctccttagccttttgtattccctgaaa 397

                                                                       
Query: 184 actggcaatagaactctgatgttctgagttctagcaggcagaataatggacacctaaaga 243
           ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 396 actggcactagaactctgatgttttgagttctagcaggcagaataatggacacctaaaga 337

                                                                       
Query: 244 tatccacttcttcattccagaccctctgagagtgtcccctccctcggaaagggattggac 303
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 336 tatccacttcttcattccagaccctctgagagtgtcccctcccttggaaagggactggac 277

                  
Query: 304 aggtata 310
           |||||||
Sbjct: 276 aggtata 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)