BAC Information

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BAC

Clone NameMSMg01-279C14
Chromosome13 (Build37)
Map Location 22,383,792 - 22,384,434
singlet/doubletsinglet
Overlap genenone
Upstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726
Downstream geneV1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279C14.T7 (MSMg01no279_c14.b1)MSMg01-279C14.TJ (MSMg01no279_c14.g1)
ACCAG416597AG416598
length1,017746
length of high quality
(start - end)		---644 (77 - 720)
definitionCHROMAT_FILE: MSMg01no279_c14.b1 PHD_FILE: MSMg01no279_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:41 2005CHROMAT_FILE: MSMg01no279_c14.g1 PHD_FILE: MSMg01no279_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCATTTTAATCATTATTAACTCTCAACCTAAGATGCTATATGAATCAC
ATATTACAAATATTCCTTCCCATATCCCCGCCCCTCCATTTCCGCTACCT
AACTTACTCCTCATGAAGCAATCTGCCTGCCTATGTATACTCTGTACTTT
CCTGAATAGACCACACCCATTATAACGACCCGTTCGCTTTTCGTTCTTCA
CTTTCCGTTTCTCGTAGCTTCCTTTGTTTCGCTTCCCGATAAATCCTTCT
TCCTTNNGNNGNGGGGGGCACCTCCTAAAATAAAANNTTGGCCGNGGCCC
CGGNCNTAAAATAACCGNAAACNTNCAACNTAANTAAGGNGNGGNAAGAA
AGGGNCATNCNNCGCCGGNGNAAAAATNTNCNNTAANANNAGNAACCTGG
NTTAACCNTGGNGGTTAAAAACTTTGTTTTAAACCTTTCCTTTTTAAGNT
GGCCGGNTTTTTAACTAAGGTTTTTTTTTCCCCCAATTTTCCCCAAGGCC
TTAAATGGGNCCAATTTTTCCAAAAATGGGCTTGGTTAAAATTAAGGTTT
TTGGAAAAAAAAATTGGAAAACTTGGGTGGGGTATAAAGGGAAAAAAAAA
ATCCCAAATGGGGTGGGGAAAAAAAAAGAAAAAATTTTTGGGAAAATAAA
AGGAAAATATTTTTTTTTAAAAAAGGAAAAAAATATGGGGGGGGGCATTT
TAACCCCCCGGAAAAAAAGAGGGTGAGAAATAAAAAAAACCCCTCTTTTT
CTCCCACCAAAATTTTTGTGGGGGGGGAAAAAAGATTTTTTCCCCCCCAA
AAAAAAAAGAGAGTTTTTTTTTCTTGTTGGGGGGTTGCCTCTAGGGGCGG
GAAAAAAAAAAACCCCCTTTTCTTTGTGGGGGGCCCCCCACCAACAAAAA
ATATTTTTTTTGTTAAAAAAAAAAAAAAAACAAGTGGGGGGGAGAAAATA
AATTTTGTGGGTGGTCCCCTCCTCCACAAAAAGAAGAGTGCGTGGGGATA
AAATACAAAAAGAAGAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACTCCAAGAAGTCTCTAGAACGC
CTCAAAAGCAACATGAAAATCAATACAGATCAAAACAAACCTTTCTTAAT
GCATCAACTTGCATACTTTCAGAGCAAGTCCTTTCTTCTGCAATGCCTTT
TGTTTTAGTATTGTGATTTTTTTCTTTTTAAATGATTATGGCAAAGACCT
GTTTTATATCCTGCCTCTAGTTACTATATCTTTGATTCATATATATTTAT
ACTTGAGAGGTGTTCTTATAAAATCAAACTATTCTGCAGATTTTACTGCT
GACAAAGTTCCTGATTTTCATCATATACCTTAACACCAAGCCCACCTGCA
CAGTGCTTCAATCTTGGTGCAGCTGATAACATTGAAGTAAAGACTCTGCG
GTGAGCTTATGATCCGAATAAATCAGGTACACTGACTGGATGTAGCCCGA
CTGTGCACTGGAGCAGTCAAGAAGGGTTCAGGAGAGGGCTGCCTTCACAT
GGAGTGACCTCATGGCCTCTGAGAGAACATGGAATAGATCTGAATGAGCT
GCTGATGATCAAGAGGAGAAGGAAGTCTTCCTGGGAGTTATGTGATGCCA
TAGGATAAATGCAGTTTATGAGGTTGGAATCTCTAGTAATGCCTACCTAG
TGCATTAGGGGTCTGAGCTAAGACAGTGTTAACCCTCATACCAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_c14.g1 MSMg01no279_c14.g1 CHROMAT_FILE:
MSMg01no279_c14.g1 PHD_FILE: MSMg01no279_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:41 2005
         (644 letters)



>mm_chr13_22383591_22384634
          Length = 1044

 Score = 1212 bits (627), Expect = 0.0
 Identities = 639/643 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   actccaagaagtctctagaacgcctcaaaagcaacatgaaaatcaatacagatcaaaaca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 actccaagaagtctctagaacgcctcaaaagcaacatgaaaatcaatacagatcaaaaca 785

                                                                       
Query: 62  aacctttcttaatgcatcaacttgcatactttcagagcaagtcctttcttctgcaatgcc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aacctttcttaatgcatcaacttgcatactttcagagcaagtcctttcttctgcaatgcc 725

                                                                       
Query: 122 ttttgttttagtattgtgatttttttctttttaaatgattatggcaaagacctgttttat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ttttgttttagtattgtgatttttttctttttaaatgattatggcaaagacctgttttat 665

                                                                       
Query: 182 atcctgcctctagttactatatctttgattcatatatatttatacttgagaggtgttctt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 atcctgcctctagttactatatctttgattcatatatatttatacttgagaggtgttctt 605

                                                                       
Query: 242 ataaaatcaaactattctgcagattttactgctgacaaagttcctgattttcatcatata 301
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 604 ataaaatcaaactattctgcagattttactgctgacaaagttcctgagggtcatcatata 545

                                                                       
Query: 302 ccttaacaccaagcccacctgcacagtgcttcaatcttggtgcagctgataacattgaag 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ccttaacaccaagcccacctgcacagtgcttcaatcttggtgcagctgataacattgaag 485

                                                                       
Query: 362 taaagactctgcggtgagcttatgatccgaataaatcaggtacactgactggatgtagcc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 taaagactctgcggtgagcttatgatccgaataaatcaggtacactgactggatgtagcc 425

                                                                       
Query: 422 cgactgtgcactggagcagtcaagaagggttcaggagagggctgccttcacatggagtga 481
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 424 cgactgtgcactggagcagtcaagaagggttcaggagagggctgccttcccatggagtga 365

                                                                       
Query: 482 cctcatggcctctgagagaacatggaatagatctgaatgagctgctgatgatcaagagga 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cctcatggcctctgagagaacatggaatagatctgaatgagctgctgatgatcaagagga 305

                                                                       
Query: 542 gaaggaagtcttcctgggagttatgtgatgccataggataaatgcagtttatgaggttgg 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gaaggaagtcttcctgggagttatgtgatgccataggataaatgcagtttatgaggttgg 245

                                                      
Query: 602 aatctctagtaatgcctacctagtgcattaggggtctgagcta 644
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aatctctagtaatgcctacctagtgcattaggggtctgagcta 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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