BAC Information

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BAC

Clone NameMSMg01-279D16
Chromosome13 (Build37)
Map Location 50,083,617 - 50,083,918
singlet/doubletsinglet
Overlap genenone
Upstream geneWnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099
Downstream geneLOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279D16.T7 (MSMg01no279_d16.b1)MSMg01-279D16.TJ (MSMg01no279_d16.g1)
ACCAG416648AG416649
length761767
length of high quality
(start - end)		333 (46 - 378)295 (74 - 368)
definitionCHROMAT_FILE: MSMg01no279_d16.b1 PHD_FILE: MSMg01no279_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:46 2005CHROMAT_FILE: MSMg01no279_d16.g1 PHD_FILE: MSMg01no279_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:46 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTATCATCATCATTAAGAATTAAGAAATATAGCATCCCTATAA
GGCAGTAAGTTTTCCTTGCCCTGCAGAAATGTCTACGAAGGGTGGGCTAA
TGCCTAGTGTTTCTTATATAAATTTAATAATAACCAATATAAATTAATAG
CAGGAATCTTTTCTCCTACTTAATCTTCTTGGCCTTGCCTAAAGAAGCGA
ATCTGACATCCTTTATAATTCATGAGGGAACCATCTCAGGAAGATCACCT
GCTAGGTTTGAGTTTCTCCTAGATGTCTCCTGGCATCAATGGCTTCATGC
ATAATGCATGGCTGCTGTTGACTCCCACTTCTCTATATCTGAATGCATGG
CTGTGCCCCTCTGGACTCTATGTGGACATCCACCCATTCCAATCTTTGTT
TTAATTTGACCTAGGTCACAGAATCTCTGGTCAGCAAGACCTGGTCATCT
CCAATTCCCCTCTACCAACATGAATGGTCATTCCTCTCTTCACTTGGTTA
GATGATGGTCACAGGTCCTCTGGCATCAATGTCTGACTTCAGTTTGATTC
CAATTCCCCTGTATGTGAATGGATGGTTGTGCTCCTCTCTGTTCTGACTT
GGCTACAGCTCATCTTGCTTGCTGNTCTGCTATGGTGTAGGTCATAGAGA
ATCTCAGAAGTGTGGTATGAACCACCCAGCTTGATCGTCACAGATTCTAC
TTTTCATTTTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCTGGACATGACCTAATTGAAGAAG
ATCATGAGATTCATGCTTTCTGGACATGAGATTCAGAAGTCCAAGAAAAA
GAGATAGCTGCATTGAAGGAATTCAGGGACAGGAAATCCCCAGGTTTTGT
GACACCACAAAGCTGTGGTGGGCCTGGATGTGTGCTACACTTGTGTAGTT
GGAGCACTGGAGGGATACTGTGCCTCTGTATGGGGATTCCCAGGTCCACC
TGCCAGCATGGAGCTTCAAGTCTCCCAGGTGCAAATCTATCTTTCAGATA
GCATGTCCTGTGGCACTTGTTGTAATATCCCCGCCACACGACAGGACTGG
ATGGAGGGGCAAGGAGAGTGCACATGGAGAGATAACCTACCTCCATTCCC
CTTGCTCACATTCAGTGCTTGAGCATTAGAGTCCTAGTATGCGTGGGGAG
TTATAAGAGGATGCCTCACTCCTGCGTGTTCTTATTTCTTGACCTTATCC
TACGTAAATATCTCCAGGAAGTAAATATGGCAGAAAAAAATGTGGATGAC
ACCCAGACTCCATCACAAAGTATGAAAATGTAAGAAATCCATCTGTCTTG
TGAAATTTTTTCCCTAAAAAATGTGAGGTCCCCTCCTGAGGTACTTCATA
TTGCAGATGCTATGCTGGGTGAATTTGGAACAACTCCTGTTTTGATGCTA
CACTTAAGGTTATGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_d16.g1 MSMg01no279_d16.g1 CHROMAT_FILE:
MSMg01no279_d16.g1 PHD_FILE: MSMg01no279_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:46 2005
         (295 letters)



>mm_chr13_50083417_50084118
          Length = 702

 Score =  542 bits (280), Expect = e-158
 Identities = 294/302 (97%), Gaps = 7/302 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctggacatgacctaattgaagaagatc---atgagattcatgctttctggacatgag 57
           ||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||
Sbjct: 502 cttctggacatgacctaattgaagaagatcatgatgagattcatgctttctgaacatgag 443

                                                                       
Query: 58  attcagaagtccaagaaaaagagatagctgcattgaaggaattcagggacaggaaatccc 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 attcagaagtccaagaaaaagagatagctgcattgaaggaattcagggacaggaaatccc 383

                                                                       
Query: 118 caggttttgtgacaccacaaagctgtggtgggcctggatgtgtgctacactt----gtgt 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||
Sbjct: 382 caggttttgtgacaccacaaagctgtggtgggcctggatgtgtgctacacttgtgagtgt 323

                                                                       
Query: 174 agttggagcactggagggatactgtgcctctgtatggggattcccaggtccacctgccag 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agttggagcactggagggatactgtgcctctgtatggggattcccaggtccacctgccag 263

                                                                       
Query: 234 catggagcttcaagtctcccaggtgcaaatctatctttcagatagcatgtcctgtggcac 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 catggagcttcaagtctcccaggtgcaaatctatctttcagatagcatgtcctgtggcac 203

             
Query: 294 tt 295
           ||
Sbjct: 202 tt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 702
Length adjustment: 9
Effective length of query: 286
Effective length of database: 693
Effective search space:   198198
Effective search space used:   198198
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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