CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGCTGTGTTCGTGACTGGCCTTTGGGCTCAGACTGAACATTGTA
GAGTGGGTGGCCGTGGGTTGGTTTGGTTCCTCCTTGTAGACCCCTAGCAA
CACAAGATGGACTAGTCTGGAGGGAAAACAGGCCTTTTGAGTTGGGAGCT
AACCCCTCCACGTAAGGCCCAGAGAAGGGACATCAGTGGTAAAGGTGAGT
AGGCTCAGTAATTGGGTTTCCTGCAGTCATTCTAATTCTGAATGGTTCCA
TAACTGCTTATTGGAACAGGAGCTTCAAGATGGTTTCTAGTGGGAAATTA
ACAGATCAAACCAAGACTACTGTAAACTACTGAAGGTACCAGCTAGTGCT
AAGACAGCAGAAGTGATTACATGTCCAGAAAACCTTTTTGTTTATAAAAT
GTCACAAAAACATTGTTAAAATGAGAATAAAAGCCTTAATCTTTTACATG
TGGACTTGCATGCCCACATCAAGGACTTTGTAGAATCATGCTTTGATAAG
GAATAAAGTAAGCATCATCAGGAAATGGCCAGTTTTTAAGGGAAGTAGAT
GAACAACGAAATGTACTTCATTAAAGAAACAAATAGACATCAGTCAACAG
AAAAAACTGAAGGCTATTTTAAGGTGGGGGTGGGTGTTGGAGAGATNNNA
NAATTTATTCTGGTANNAATTATACAAGATATTAAAATTTTTTAATTTTC
TGAAACTAAAATGGTATC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACGGGTCTACACCAGCAATC
ACTCTTACACAGATTAATAATGAAAAGCACAAGATGGACAAAGAGAAATA
TAAAATGTATAATTTAAAGAGAAAAGAAGCAGCAGGAAGTGTAATGGAGC
TAAGCCCAGTGCTCAGGGAGATTAAAAAAAAAAAGTTTTAAGAAAAGCCT
GTTGCTAAATGGAGTAACAGGAGTAGTGAACTCGGGACTAAGCTTCCAAC
TTCAATCAAAGAAAGGCTTAGGATTTTCTTTAGTGAAGGAAACCGTTAAC
AACAGAAACTTGATACAATGTAACTGAATGAGACACCCAAGTTCCAGCCC
CAACAAGTTAAGGAATTTGGTAGCCTCTGCCATGTGGTTCTGGATTTAAA
GTCAAGGATAGAAAAGGGGGTTATAAATCTCCCTCCCAGACTAAAGAAAG
CCACTGAGCCCTGGAGTGTATAGTTGGGGTGTCCTTGCATAAAGGCCTAG
AGAAGCCATTGCATGAACCTGTGAAGGAGAGGCTTGGATTGCCTTGGAGA
TCTCAAGATATTCAGAAATTCCAGAGCTGTGGGAGCTGCAGACTGCGTGT
GTAATCATCCCAAGAGAGAGAAATACATTAAGGTCAACAAAGCTGAAAGG
AGTTAGAGATCTGAAGAGTGCTTTGTCAATAGACACAGAGATACAGAATT
TGGAATTTTCCCTTCTGATTTTCAGTC

Query= MSMg01no279_n03.b1 MSMg01no279_n03.b1 CHROMAT_FILE:
MSMg01no279_n03.b1 PHD_FILE: MSMg01no279_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:31 2005
         (629 letters)



>mm_chr13_48628244_48629272
          Length = 1029

 Score = 1203 bits (622), Expect = 0.0
 Identities = 625/626 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatgctgtgttcgtgactggcctttgggctcagactgaacattgtagagtgggt 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ggaattcatgctgtgttggtgactggcctttgggctcagactgaacattgtagagtgggt 770

                                                                       
Query: 64  ggccgtgggttggtttggttcctccttgtagacccctagcaacacaagatggactagtct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ggccgtgggttggtttggttcctccttgtagacccctagcaacacaagatggactagtct 710

                                                                       
Query: 124 ggagggaaaacaggccttttgagttgggagctaacccctccacgtaaggcccagagaagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ggagggaaaacaggccttttgagttgggagctaacccctccacgtaaggcccagagaagg 650

                                                                       
Query: 184 gacatcagtggtaaaggtgagtaggctcagtaattgggtttcctgcagtcattctaattc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gacatcagtggtaaaggtgagtaggctcagtaattgggtttcctgcagtcattctaattc 590

                                                                       
Query: 244 tgaatggttccataactgcttattggaacaggagcttcaagatggtttctagtgggaaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tgaatggttccataactgcttattggaacaggagcttcaagatggtttctagtgggaaat 530

                                                                       
Query: 304 taacagatcaaaccaagactactgtaaactactgaaggtaccagctagtgctaagacagc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 taacagatcaaaccaagactactgtaaactactgaaggtaccagctagtgctaagacagc 470

                                                                       
Query: 364 agaagtgattacatgtccagaaaacctttttgtttataaaatgtcacaaaaacattgtta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agaagtgattacatgtccagaaaacctttttgtttataaaatgtcacaaaaacattgtta 410

                                                                       
Query: 424 aaatgagaataaaagccttaatcttttacatgtggacttgcatgcccacatcaaggactt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaatgagaataaaagccttaatcttttacatgtggacttgcatgcccacatcaaggactt 350

                                                                       
Query: 484 tgtagaatcatgctttgataaggaataaagtaagcatcatcaggaaatggccagttttta 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgtagaatcatgctttgataaggaataaagtaagcatcatcaggaaatggccagttttta 290

                                                                       
Query: 544 agggaagtagatgaacaacgaaatgtacttcattaaagaaacaaatagacatcagtcaac 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agggaagtagatgaacaacgaaatgtacttcattaaagaaacaaatagacatcagtcaac 230

                                     
Query: 604 agaaaaaactgaaggctattttaagg 629
           ||||||||||||||||||||||||||
Sbjct: 229 agaaaaaactgaaggctattttaagg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)