This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
MSMg01-280P10
Chromosome
13 (Build37)
Map Location
88,648,350 - 88,799,815
singlet/doublet
doublet
Overlap gene
EG435375
Upstream gene
LOC675707
,
LOC667230
Downstream gene
Edil3
,
Hapln1
,
EG667266
,
Vcan
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC675707
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:675707
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins
pseudo
: _no_value
name
LOC667230
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:667230
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 ESTs, 9 Proteins
name
EG435375
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:435375
MGI:3648667
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins
pseudo
: _no_value
name
Edil3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13612
MGI:1329025
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Hapln1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12950
MGI:1337006
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG667266
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:667266
MGI:3647346
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 70 ESTs, 3 Proteins
pseudo
: _no_value
name
Vcan
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13003
MGI:102889
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC667230
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149264389
GeneID:667230
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 ESTs, 9 Proteins
product
: similar to ribosomal protein L21
transcript_id
: XM_001479065.1
name
Edil3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141803442
GeneID:13612
MGI:1329025
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: EGF-like repeats and discoidin I-like domains 3
transcript_id
: NM_001037987.2
name
Edil3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141803201
GeneID:13612
MGI:1329025
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: EGF-like repeats and discoidin I-like domains 3
transcript_id
: NM_010103.2
name
Hapln1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:46048400
GeneID:12950
MGI:1337006
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: hyaluronan and proteoglycan link protein 1
transcript_id
: NM_013500.3
name
Vcan
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124486954
GeneID:13003
MGI:102889
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: versican
transcript_id
: NM_001081249.1
name
LOC667230
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149264390
GeneID:667230
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001479115.1
name
Edil3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:83921564
CCDS:CCDS26669.1
GeneID:13612
MGI:1329025
definition
GO_function
: GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007275 - development [Evidence IEA]
codon_start
: 1
note
: isoform a is encoded by transcript variant 1; developmental endothelial locus-1
product
: developmental endothelial locus-1 isoform a
protein_id
: NP_001033076.1
name
Edil3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:46879190
CCDS:CCDS26670.1
GeneID:13612
MGI:1329025
definition
GO_function
: GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007275 - development [Evidence IEA]
codon_start
: 1
note
: isoform b is encoded by transcript variant 2; developmental endothelial locus-1
product
: developmental endothelial locus-1 isoform b
protein_id
: NP_034233.1
name
Hapln1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:46048401
CCDS:CCDS26671.1
GeneID:12950
MGI:1337006
definition
GO_component
: GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IDA]
GO_function
: GO:0005540 - hyaluronic acid binding [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: link protein; cartilage linking protein 1; cartilage link protein 1
product
: hyaluronan and proteoglycan link protein 1
protein_id
: NP_038528.2
name
Vcan
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124486955
GeneID:13003
MGI:102889
definition
GO_component
: GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IDA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005540 - hyaluronic acid binding [Evidence IEA]; GO:0005529 - sugar binding [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]
codon_start
: 1
note
: PG-M core protein; heart defect
product
: chondroitin sulfate proteoglycan 2
protein_id
: NP_001074718.1
name
LOC675707
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:675707
definition
number
: 1
pseudo
: _no_value
name
LOC675707
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:675707
definition
number
: 2
pseudo
: _no_value
name
EG435375
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:435375
definition
number
: 1
pseudo
: _no_value
name
EG435375
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:435375
definition
number
: 2
pseudo
: _no_value
name
EG435375
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:435375
definition
number
: 3
pseudo
: _no_value
name
EG667266
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:94395367
GeneID:667266
MGI:3647346
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 70 ESTs, 3 Proteins
product
: predicted gene, EG667266
pseudo
: _no_value
transcript_id
: XR_002000.1
clone name
MSMg01-336M20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-155A01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-532E14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-373M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-164J20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-163J20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-116F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-519C05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-547E06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-316G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-389E05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-372J15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-449F21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-490O17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-541F21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-390O24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-329G20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-535J07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-064L24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-067G09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-192E02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-429A05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-447B16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346C20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-203G08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-477N22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-298C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-466O02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-482B14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-164H04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-136B20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-321E07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273B10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-280P10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-342H24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-098F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346F09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-123N10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-073D03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546C13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-341M19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-195K09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-528K21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-160J04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-159L24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-096F09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-095M11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-118O12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-372N17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-176H04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-094L02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-094G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-491I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-304E11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-501D18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-470D06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-122O18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-214A15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-484F20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-429P08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-468I16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-306I11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-425B15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-057G23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-231J17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-372H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-263N19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-133I22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-361K02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-531C02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-280B11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-275N17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-428K22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-189P12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-373F07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-497D03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-475N09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-156M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-126K02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-059P06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-156A03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-479M16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-139N11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-460K12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-155J22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-234B05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-402A24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-304J16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-151I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-339J11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322N21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-337D04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-320L10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-481I08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517F12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-395F07
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-151I13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-351N23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-121F10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-522N16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-140N14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-299B05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-207F04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-076E01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-019F12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-068N17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-059L09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-022M08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-033O13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-051J05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-063N01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-106L09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-052D01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-260A13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-324D11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-009G08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-134D18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-131J19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-080I02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-261F10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-116P01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-048O04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-124B02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-343O19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-063B22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-216N04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-230F17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-219O03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-260E19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-041P07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-315M13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-348I16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-001K17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-062E02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-218N17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-054E12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-302F12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-302G12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-159B05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-014J06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-130G05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-302N22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-343H17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-061F19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-061P09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-110F11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-190E13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-222F21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-039I01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-152L20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-156J18
singlet/doublet
doublet
plural/unique
unique
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B6Ng01-070L11
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doublet
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unique
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B6Ng01-219E23
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B6Ng01-225K05
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doublet
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B6Ng01-291P06
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doublet
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B6Ng01-139A09
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B6Ng01-092I22
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B6Ng01-035B20
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doublet
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doublet
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doublet
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doublet
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B6Ng01-098L03
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doublet
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B6Ng01-038G22
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doublet
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B6Ng01-178C03
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B6Ng01-093F05
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B6Ng01-170A08
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B6Ng01-011E02
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B6Ng01-271H24
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B6Ng01-130B17
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B6Ng01-132M07
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B6Ng01-342N08
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B6Ng01-239A09
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B6Ng01-089K03
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B6Ng01-181M20
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B6Ng01-052L16
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B6Ng01-104G06
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B6Ng01-152G23
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B6Ng01-267D19
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