Query= MSMg01no288_p11.b1 MSMg01no288_p11.b1 CHROMAT_FILE:
MSMg01no288_p11.b1 PHD_FILE: MSMg01no288_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:11 2005
(689 letters)
>mm_chr13_51348206_51349294
Length = 1089
Score = 1160 bits (600), Expect = 0.0
Identities = 667/692 (96%), Gaps = 9/692 (1%)
Strand = Plus / Minus
Query: 5 gaattcaattcccag-tacc-catgtgatggctcacaaccatctgtacagctacagtgta 62
||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct: 1001 gaattcaattcccagcaaccaca--tgatggctcacaaccatctgtacagctacagtgta 944
Query: 63 ctcatatacata----aaataaccaaatagatcttaaataaataaataaa-aaataaagc 117
|||||||||||| |||||| |||||||||||||||||||||| ||| |||||||||
Sbjct: 943 ctcatatacataaaataaataaataaatagatcttaaataaataaacaaataaataaagc 884
Query: 118 atgtgtctcttatttgtccaaatctagggtccagatcaagtattttcctttaatctagtc 177
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||
Sbjct: 883 atgtgtctcttatttgtccaaatctagagtccaaatcaagtattttcctttaatccagtc 824
Query: 178 tagtatgtgtgtttaataagtcatgttcattagatgaaatgtggaggctgaagaatgtgc 237
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 823 tagtatgtgtgtttaataagtcatgttcattaggtgaaatgtggaggctgaagaatgtgc 764
Query: 238 aaagcaaaacctggcagtcactcatgatgacctcatcccattttctcttccctaaagaag 297
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 763 aaagcaaaacctggcagtcacttgtgatgatctcatcccattttctcttccctaaagaag 704
Query: 298 tcattactgtctgaaagagcaggctggagcacacagtccctgccctctgggatacccctg 357
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tcattactgtctgaaaaagcaggctggagcacacagtccctgccctctgggatacccctg 644
Query: 358 agactggcattctgaatccttcgtggcatgggagctcagcttctgagcatagaaggaaac 417
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 643 agactggcattctgaatcctccgtggcatgggggctcagcttctgagcatagaaggaaac 584
Query: 418 atgaacagagttttgtaggaatttgatgccacactaaaattgctagcctcatcctgccct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atgaacagagttttgtaggaatttgatgccacactaaaattgctagcctcatcctgccct 524
Query: 478 cactcagaaaactaccagtttggccgtgatggagcctattttagtaaaagcttcactggg 537
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 523 cactcagaaaactaccagtttggccgtggtggagcctattttagtaaaagcttcactggg 464
Query: 538 atgtgacactaagcagagaaaccactctgtatcccccactctatggatgaagacgccaac 597
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 atgtgacactaagcacagaaaccactctgtatcccccactctatggatgaagacgccaac 404
Query: 598 accagactgaaagaaaagcctgagacaaacgtggatggtgtgaccagaagaactaaggcc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 accagactgaaagaaaagcctgagacaaacgtggatggtgtgaccagaagaactaaggcc 344
Query: 658 cctgacttcacctcagccgttagacaggagag 689
||||||||||||||||||||||||||||||||
Sbjct: 343 cctgacttcacctcagccgttagacaggagag 312
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_p11.g1 MSMg01no288_p11.g1 CHROMAT_FILE:
MSMg01no288_p11.g1 PHD_FILE: MSMg01no288_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:11 2005
(316 letters)
>mm_chr13_51203115_51203833
Length = 719
Score = 601 bits (311), Expect = e-176
Identities = 316/319 (99%), Gaps = 3/319 (0%)
Strand = Plus / Plus
Query: 1 gcttccacacatcatgagactgtcgtgagaacacacacacacacacacacacacaaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttccacacatcatgagactgtcgtgagaacacacacacacacacacacacacaaataa 260
Query: 61 ataagtaaaagctcccttgaaaaaatttcagttgtggtataagtttggtttatttgcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataagtaaaagctcccttgaaaaaatttcagttgtggtataagtttggtttatttgcatt 320
Query: 121 aaattcttgcttagtctttaccagttcatataatatttttaatgtttggctttttgagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattcttgcttagtctttaccagttcatataatatttttaatgtttggctttttgagac 380
Query: 181 agggtctcatgaccctcttggcttagttcctcaaattctgggattgcagacctggccact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggtctcatgaccctcttggcttagttcctcaaattctgggattgcagacctggccact 440
Query: 241 tcgtgatgcctgttttaattttcttactgtgtttctgtttgcttcgccccccccccccc- 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcgtgatgcctgttttaattttcttactgtgtttctgtttgcttcgcccccccccccccc 500
Query: 300 --aacagatccctgtgaac 316
|||||||||||||||||
Sbjct: 501 ccaacagatccctgtgaac 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 719
Length adjustment: 9
Effective length of query: 307
Effective length of database: 710
Effective search space: 217970
Effective search space used: 217970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
