BAC Information

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BAC

Clone NameMSMg01-289B21
Chromosome13 (Build37)
Map Location 78,278,480 - 78,278,723
singlet/doubletsinglet
Overlap gene1110033M05Rik
Upstream gene2210408I21Rik, LOC631139, LOC675063, D13Mgi7, 1700013G10Rik
Downstream geneNr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052, EG666883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289B21.T7 (MSMg01no289_b21.b1)MSMg01-289B21.TJ (MSMg01no289_b21.g1)
ACCAG418758AG418759
length725711
length of high quality
(start - end)
239 (128 - 366)234 (133 - 366)
definitionCHROMAT_FILE: MSMg01no289_b21.b1 PHD_FILE: MSMg01no289_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:22 2005CHROMAT_FILE: MSMg01no289_b21.g1 PHD_FILE: MSMg01no289_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTTCCAATTCACTCACGCGGGACCTGAGACAGCATTAGGGAAGCA
GAAAACCCCAGCCTGACTATTGTTCCCAATCCCTTCTTGTCAATGCCAGC
ACCAGATCACCTTGGGCACAGAGTCGGCTGACACGCCCAAGATCCCTAGA
GGACTCTCCACAAGATCTTAGGACCTCTGGTGAGTAGACACAACTTCTGT
TCCAATCCAATCTCGTGGGACCTAAGACAGCATTAGGGAAGCAGAAAACC
TGGCCTCACCTGAGTGACAAGTACCTTCGGTCTGTGCCAGCACCTGGTCA
CCTTGGGCACAGAGTTGTTTGACACCCCCCAGGTCTCTAGAAGACAGCTT
CTGAGGCAGACTCCTTTCGCCCTCCAGACATCCAGGCACTTTCCTGGCCA
GAGGAGAGGTGTCCAACCTGCCTGGGAGGGCTTTCCCAGAGGACCTGGGG
GAGCCATCTTGGTTCCCGGATTCCTCCAAGACTAGTCTGTGCAGATGAGA
GTGTGGACTACAGAAGCTAACAACTTCTGTGACAGGCCGAAGCAACACAG
GTCCTGGGACAGGTCCTGTTTCGGCCTTCATGTTCTGCCAGGAGGAAAGT
CCAAACACCAGATATCTGTACACATTTCCTTTAAGAGGAGAGCTGGCCTG
CAAAGAGTGCTCTGACCACTGGAAC
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATTCTGAAATTTTACATTGAAGAA
AAAAATAACATTTAAAAGATTTTAACCAATGAGAAGAGAAAATGGGGCTG
GAAAAACAGATCCAAAGCAGGTAAAGATGGGATAAAAATGATTACATGAG
CATGCACGTGTGCATCTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTCAGTGTCACTGTTATTTTGTACAATTAATATGTACCAATAAAAAT
ATTCCCATAAAGAGGAATTATAGTGGTTCTGTGGAGAAGACATCACATGG
CTGTACTTGAGTAGCGCGTATTTCCTAGGCTCCATCATCAATACCACATG
AAGCCAGATCCGGCAGCACAGCCCCACAAACCCAGCACTTGGAAGTAAGA
CAGGATAATCAGGAGTTCAAGAGCATCCTCCGCTCCATGGTGAGATGCAG
GACGGCCTGAACTACATAAGACGCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTCTCTC
TCTCTATANATATGTATACTCATCTTATATAACATACTGTGTTTGGTATA
TGGACTTATGTCTGAAATCCCAAAGTTCCCATAAATATATCCGGAATATC
CTTATTTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_b21.g1 MSMg01no289_b21.g1 CHROMAT_FILE:
MSMg01no289_b21.g1 PHD_FILE: MSMg01no289_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:22 2005
         (234 letters)



>mm_chr13_78278290_78278923
          Length = 634

 Score =  402 bits (208), Expect = e-117
 Identities = 231/244 (94%), Gaps = 10/244 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagagaaaatggggctggaaaaacagatccaaagcaggtaaagatgggataaaaatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaagagaaaatggggctggaaaaacagatccaaagcaggtaaagatgggataaaaatgat 250

                                                                       
Query: 61  tacatgagcatgcacgtgtgcatctgtg------tgtgtctgtgtgtgtgtgtgtg---- 110
           ||||||||||||||| || | |||||||      ||||||||||||||||||||||    
Sbjct: 251 tacatgagcatgcacatgcgtatctgtgtgtgtctgtgtctgtgtgtgtgtgtgtgtgtt 310

                                                                       
Query: 111 tgtgtgtgtgtgtcagtgtcactgttattttgtacaattaatatgtaccaataaaaatat 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgtgtgtgtgtgtcagtgtcactgttattttgtacaattaatatgtaccaataaaaatat 370

                                                                       
Query: 171 tcccataaagaggaattatagtggttctgtggagaagacatcacatggctgtacttgagt 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tcccataaagaggaattatagtggttctgtggagaagacatcacatggctgtacttgagt 430

               
Query: 231 agcg 234
           ||||
Sbjct: 431 agcg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)