BAC Information

Click to search

BAC

Clone NameMSMg01-290J13
Chromosome13 (Build37)
Map Location 53,539,927 - 53,540,164
singlet/doubletsinglet
Overlap genenone
Upstream geneDiras2, LOC100040572, Syk, Auh, Nfil3, Ror2, Sptlc1, LOC100040421
Downstream geneMsx2, EG432760, E130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290J13.T7 (MSMg01no290_j13.b1)MSMg01-290J13.TJ (MSMg01no290_j13.g1)
ACCAG419832AG419833
length729730
length of high quality
(start - end)
520 (48 - 567)239 (125 - 363)
definitionCHROMAT_FILE: MSMg01no290_j13.b1 PHD_FILE: MSMg01no290_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:12 2005CHROMAT_FILE: MSMg01no290_j13.g1 PHD_FILE: MSMg01no290_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAAACAAATAACCTAATTAATGCACATGAAAGCCCTGGAAAAA
AGAAAAACAAGTTAAAGCACGAATCAGCAGATGGAAAGAAATCGTTAGGT
TCAGGGAAGAGCCATGCAAAGAATCATCCAAAGACAAAGAAGACTGAAAA
ATGCTTAGCTGCGCTAACCAGAAGAAAACGAAAGAAAACAAAATCAGTAA
AACATAAAGATGAAGTAGGAGTCATTTCAGGAGATGAAAACAAAACCCAG
AAAATTGTTGGTCATACTCCATAAATATGCATTCCACTAAATTGGGGCAC
CTAAAAGCAACAGATGAGTTTCCAGATGCATTTGAACTGCCAAAATGAAA
ACAAGATAAGATAGAAAGTTGAAGCAGATCTATAACAAGAAGCAAAATTG
AATCAGTAATGAAAAATCACCCAACTAATAGAAGACTAGGCTCAGAGGCT
CCAATGGAGAAAACTTATCAGATCTTCCAGGAACACTAATGCCAACTATC
TTAGTCAGGGCTTGTATTCTTGCACAAAACATCATGACCAATAATCCAGT
TGTTGAGGAAAGAGTTAATTCAGCTTAAACTTCCCCCATTGCTGTTCACC
ACCAAAGGAAGCCCCGACTGGAACTTTAACCGTGCATGAATCACGGTACT
GATGTACAAGCCATGTTATTGCCGTTTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTGCTTCAGTGTCCTAAGTGCAG
GAATTGGAGATGTGAGTCTCCACGCCTGGCCTCAAGTGTCTCATTTAAGC
GGATACTTTTCACAGTTTTTCCCTGTTACTCATCACTGTGAAAGCTGCTT
GCTTTGGTTGTTACTGTTGAAAAAAAAAGTTTGAAAGAGATTGGACCGAG
GTGCCCAATCCGAAAGCATTTGCAGAGCTAGGTATAAACACAGTTAGCAT
TGCTTAAATAATAATTATCAAAAATGATATTAAATTACGCCCAGGTGCAC
ATGTCCGTGTGTTATAATAGACAGCGAATGCATTGCGATGCACACAGGTG
TCTATCTGATGTAGGAATAATAGATATTTAGACAAACACACAGCATCACT
TTTCATTTTTAACTCAGTGAGTCCTAGTAGGGGACATAGTTTTCTGATTC
CAGCATCTCATGGCCATGCATAGAACCCCGGCCCTGTCCGGGATGATTCA
GTTGCTTCTGTTGCCTCCATGTCCTACTGGGACTCCGAAATGTACCCCGT
CCTCCACTAACCTACAGCCTCACTGCCCAAGAGGGCTGCCATTGAAACCC
CATCACCGGCATCGTTGACCATTCTCTCAGAGACTACCCTCATTTGCACC
TAGAGGGCCTCCCATAGTAATGCTGGTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_j13.g1 MSMg01no290_j13.g1 CHROMAT_FILE:
MSMg01no290_j13.g1 PHD_FILE: MSMg01no290_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:12 2005
         (239 letters)



>mm_chr13_53539727_53540365
          Length = 639

 Score =  460 bits (238), Expect = e-134
 Identities = 238/238 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggcctcaagtgtctcatttaagcggatacttttcacagtttttccctgttactcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggcctcaagtgtctcatttaagcggatacttttcacagtttttccctgttactcatc 260

                                                                       
Query: 61  actgtgaaagctgcttgctttggttgttactgttgaaaaaaaaagtttgaaagagattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgtgaaagctgcttgctttggttgttactgttgaaaaaaaaagtttgaaagagattgg 320

                                                                       
Query: 121 accgaggtgcccaatccgaaagcatttgcagagctaggtataaacacagttagcattgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accgaggtgcccaatccgaaagcatttgcagagctaggtataaacacagttagcattgct 380

                                                                     
Query: 181 taaataataattatcaaaaatgatattaaattacgcccaggtgcacatgtccgtgtgt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaataataattatcaaaaatgatattaaattacgcccaggtgcacatgtccgtgtgt 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)