BAC Information

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BAC

Clone NameMSMg01-290P20
Chromosome13 (Build37)
Map Location 22,683,196 - 22,683,513
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494
Downstream geneV1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290P20.T7 (MSMg01no290_p20.b1)MSMg01-290P20.TJ (MSMg01no290_p20.g1)
ACCAG420117AG420118
length729728
length of high quality
(start - end)		322 (48 - 369)592 (80 - 671)
definitionCHROMAT_FILE: MSMg01no290_p20.b1 PHD_FILE: MSMg01no290_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:40 2005CHROMAT_FILE: MSMg01no290_p20.g1 PHD_FILE: MSMg01no290_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:40 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAGTACATTCCGTTTTCTCTTAATTCTATAAAATATTTTCTA
TGGATGGATACTTAACACTTTGAAGTCCCAAATACCCTTGTGGCATTAAT
ATTTAGAAAGCACATTGTCTACTACAAGCTCTGGAATTTCTTTGACTAAC
ATGATCAGAGCACTATGAATTTTGATAAAATTTATAAAATCTTGGTAGTA
GTAAAACCGGTTTTACAAATCCTTAGTAGAACCATTTTTTCAGTGCTGGA
GCATTGTCTGGTCTTCCAGAGAAGCCAGGTTCATTTCTAGCAACCAAACA
TTGATTCAGAAAAATCCTTGTAATTTCAATCAGCTACTAGATGTTTGACG
AACTCTTTGAGCCTCTTTAGGCAGAGGGCATCCATGTGACACACAGTTAT
AAATGAAGACAAACTATTCATACACCATAAATTAATACAAATATAGAAAG
GGTTTTAAAAAATCCATTTAAAAACAGTGGCAAATCGAGAATGAGATATC
TATATCACTCTAATTTACTAATGTCTTTCTCAGCTCCAGGCTGTGAATCA
ATAGGAAAAGTGAAAATAAACACACGCTAAAACTGCNNTTTTGGGTTTGT
CTTACACATAGTATTGCAGAACAGAGATTTCTTTGACATTTTTGGACATA
TAAATCAGAGATATTTTCTCAATTTCTCC

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGGAATTCAGTGAGAAGG
TTATCTATTCAGTAACATTCAAATTTACTTCTAGTAGAGACAGTGAAACT
AATTAGGCATTACAAAGAACAGACCCTGAATAGCTCAGGGCTAGTCTGCA
GAGTGATTACTTAGGACAGTAGCCATTCTCACCCAAACTAAGGAATTCAC
ATGGCCTAGCTAATAGGTGGGTTTACCACTTAAAAGTTAGGGAATCCCAC
TGAGACAGAAATCTTCACTACAGCCATGTATGGCAGGCTACATTGCATAT
TAGAAGCAAGTTGGTGAATTCTTCTGACAAATGGAGATTCTCCACAGATA
CTTAAAAGGACAGCCAAGTTACACTTATACAAGAATTTATCAGGGCCCAG
GAAATAGGGGAGGTTGTGGTATTGCATTATTCATGAGAAGGTCTGCTAGA
GCAGAACCCCCTGGTGCTAGCTTTCACAAGGCTCANAGGAGTAGCACAAA
TTGTGACTAGGGTGTGAAATCCTTACCTGTCATTAAGCTAACCTTAGGCA
GGACTGCTTTATCTTTACTGTAAACATTTACCTGGTTCCTGGTAGTCCCT
TTGAAGTCATTCCTTTGTTTTGTGTCAGGTAACTTCAATGTACTTTGCCT
GCTGTGACACCCTATCCCCTTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_p20.b1 MSMg01no290_p20.b1 CHROMAT_FILE:
MSMg01no290_p20.b1 PHD_FILE: MSMg01no290_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:40 2005
         (322 letters)



>mm_chr13_22682992_22683713
          Length = 722

 Score =  592 bits (306), Expect = e-173
 Identities = 315/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagtacattccgttttctcttaattctataaaatattttctatggatggatac 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagtacatactgttttctcttaattctataaaatattttctatggatggatac 264

                                                                       
Query: 65  ttaacactttgaagtcccaaatacccttgtggcattaatatttagaaagcacattgtcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaacactttgaagtcccaaatacccttgtggcattaatatttagaaagcacattgtcta 324

                                                                       
Query: 125 ctacaagctctggaatttctttgactaacatgatcagagcactatgaattttgataaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctacaagctctggaatttctttgactaacatgatcagagcactatgaattttgataaaat 384

                                                                       
Query: 185 ttataaaatcttggtagtagtaaaaccggttttacaaatccttagtagaaccattttttc 244
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 ttataaaatcttggtagtagtaaaacctgttttacaaatccttagtagaaccattttttc 444

                                                                       
Query: 245 agtgctggagcattgtctggtcttccagagaagccaggttcatttctagcaaccaaacat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtgctggagcattgtctggtcttccagagaagccaggttcatttctagcaaccaaacat 504

                             
Query: 305 tgattcagaaaaatcctt 322
           ||||||||||||||||||
Sbjct: 505 tgattcagaaaaatcctt 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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