Query= MSMg01no291_a06.b1 MSMg01no291_a06.b1 CHROMAT_FILE:
MSMg01no291_a06.b1 PHD_FILE: MSMg01no291_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:42 2005
(701 letters)
>mm_chr13_120221372_120222482
Length = 1111
Score = 1195 bits (618), Expect = 0.0
Identities = 681/712 (95%), Gaps = 21/712 (2%)
Strand = Plus / Minus
Query: 5 gaattcccttgttctgttctaaatggactgaaaaacatttaacctggactatgagtaaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 709 gaattcccttgttctgttctaaatggactgaaaaacatttaacctggactaggagtaaat 650
Query: 65 actagtgtaaattagtaaggttgagaaaatgtactggggcagagt----agcccaagcac 120
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 649 actagtgtaaattagtaaggttgagaaaatgtactggggcagagtagcaagcccaagcac 590
Query: 121 ttacttatccatgaaattcaggagaattacaacacagaagtcacatgcagggaagaaact 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 589 ttacttatccatgaaattcaggagaattacaacaaagaagtcacatgcagggaagaaact 530
Query: 181 gtaattacgctcccattatgcttcaaccaattttgctttcagaatcccagtccactatgg 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gtaattatgctcccattatgcttcaaccaattttgctttcagaatcccagtccactatgg 470
Query: 241 ctatttcttatcattgg------actgggaaacataggcttttcaatatccaatttaaat 294
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 469 ctatttcttatcattggacagaaactaggaaacataggcttttcaatatccaatttaaat 410
Query: 295 gttggcaactaattaaaacaatctttaaaacaaaaggtcagacagggccaaagaaacttc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gttggcaactaattaaaacaatctttaaaacaaaaggtcagacagggccaaagaaacttc 350
Query: 355 tagttcataatttg----cccccggtacactaaatagagagattgctgcactaataaata 410
|||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 349 tagttcataatttgtttt-----ggtacactaaatagagagattactgcactaataaata 295
Query: 411 taccatagaactcttaaaatacaatactgattcaaaggaagtggtgg-ggggtagcgaag 469
||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 294 taccaaagaactcttaaaataaaatactgattcaaaggaagtggtggaggggtagcgaag 235
Query: 470 atagcgtggcggctaagagcatgtaacacaggattggagggattgctcagtggttaagag 529
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 atagcttggtggctaagagcatgtaacacaggattggagggattgctcagtggttaagag 175
Query: 530 tactggctgatcttccagaaactggggttcaatttccaatatccacatggcggatcacag 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 tactggctgatcttccagaaactggggttcaatttccaatatccacatggcggatcacag 115
Query: 590 ctgtcatatataattccagttccagaggatccaacaccttcacacaaacatatatgcagg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ctgtcatatataattccagttccagaggatccaacaccttcacacaaacatatatgcagg 55
Query: 650 ccaaaaactaattcacataaaaataagtcattaaaggcg-aaaaaaggagca 700
||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 54 ccaaaaactaattcacataaaaataagtcattaaagggggaaaaaaggagca 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1111
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1101
Effective search space: 760791
Effective search space used: 760791
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no291_a06.g1 MSMg01no291_a06.g1 CHROMAT_FILE:
MSMg01no291_a06.g1 PHD_FILE: MSMg01no291_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:42 2005
(665 letters)
>mm_chr13_120063690_120064753
Length = 1064
Score = 1232 bits (637), Expect = 0.0
Identities = 658/665 (98%), Gaps = 1/665 (0%)
Strand = Plus / Plus
Query: 1 acccactaatctgcatttattgatgaaattctaagcttagagatagtttccatatcaagc 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 acccactaatctgcatttattgataaaattctaagcttagagatagtttccatatcaagc 260
Query: 61 agaaaaatagagtccaactgagcatttcaaataagacttgtatacagttaaagagatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaaatagagtccaactgagcatttcaaataagacttgtatacagttaaagagatttg 320
Query: 121 aagccagcactgactggaaaactccattattttttgacaagtctgctacttcgcaaagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagccagcactgactggaaaactccattattttttgacaagtctgctacttcgcaaagtt 380
Query: 181 gcagggttttggtgattggaaggtggtcctctagctacccatgcagaagagcaacgtact 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gcagggttttggtgattggaaggtggtcctctagctactcatgcagaagagcaacgtact 440
Query: 241 agagtgaatttcccattgtttgtgcactatgaattgtacctttgacaggaaaaaaaaatg 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 441 agagtgaatttcccattgtttgtacactatgaattgtacctttgacaggaaaaaaaa-tg 499
Query: 301 tagatccttctagggaatcaaaatacataaccatcacatgcttcagccttcagatatgtt 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 500 tagatccttctagggaatcaaaatacataaccatcacatgtttcagccttcagatatgtt 559
Query: 361 aaggtagctttaaaatcttgttacattcttccgtggctttcttcattccagtcttagcat 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 560 aaggtagctttaaaatcttgttacattcttccgtggctttcttcattccaatcttagcat 619
Query: 421 caaaggtgaaattcctcagtgtgtaagactcagttttttccatcaagttcagcaataccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caaaggtgaaattcctcagtgtgtaagactcagttttttccatcaagttcagcaataccc 679
Query: 481 ctacgcaacatctctaaatcatttctgtcttaaagttcaccattggtcattcactctgtg 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 680 ctacgcaacatctctaaatcatttctgtcttaaagttcaccattggtcattcgctctgtg 739
Query: 541 aacagggaaaggcatgatgtgtctgcagacagtccagtattctagtggaatccatagggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aacagggaaaggcatgatgtgtctgcagacagtccagtattctagtggaatccatagggc 799
Query: 601 taagcccctcatcctgtctgcctctggtttgtatcaagctgacagagtatgggccggttc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 taagcccctcatcctgtctgcctctggtttgtatcaagctgacagagtatgggccggttc 859
Query: 661 actca 665
|||||
Sbjct: 860 actca 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1064
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1054
Effective search space: 690370
Effective search space used: 690370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
