TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGATTTCTTCTTCTCATAAATGACAACAGTCAAAGACTGCTTTGC
ACTGCTTAATTTGAATTATCCATCTTCCTGATGCTGAAGTTATTAGCATC
TTAGTTGAACATCAAACTTTGAAAAACTGGGTCAATATTGTTCAATGCTG
GTATAACAGTGATACCTCATTACAAAACGAATTAGTATATTCTATAAAAC
AAATTCTTACAATTTTTTTCTTGTGTTCAAGCTATCTTTTTAAATAAGAT
TGTTTTTATTGTTTAACTATTGGTCTCTAGTAGCAAAAAAGTAATCTCTT
TACTTGAACAGTATCTATACACTTGCTACTGTGTCCTATATAAGTCTACA
GTCCTGTCCCCCCCAACTAAAACATTTCTAAAGAAACTAATTTTAGCAAT
CAAGGAAGGGTAAACACTACTTTTCTTCTACTTAGTGAGTAGATTTCATA
AGAAACAACCTAGTTAACCAGGTCAATGTTTTTCCCACACTTATAAAGTG
AGACACTCACAGAAGTGGTTTCCTTTGAACTATACTGCTTGCCTGAGCCA
GTAGTAAGGCTCCCTGAAACTCAAAAGTAACCTTAACAATCCTGAAAAGA
ATGGATAAAAACGGAGAAAAAGAGAAAAGGAAATAGGGCCACTAAAATCA
GCCTTTTGCATACATGAGCAAGCTGAGTCCTAAATCATT

ATGCAGTGGGAGGCCTGGCGGCCGCCTTTTCAAAAAATTTAGGTGACCTA
TAGAATGACAAAAAAAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATG
GGGTTATTTGTTTTTCTGAAAAATACCTTCTTGAGTTCTTTGTGTATATT
CCCCTATTGGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGA
CCTTTTTGTCCTATTGACATTGTCTTTTGCCTTACTGAAGCTTTGCAGTT
TCATGAGGTCCCATTTGTCGATTCTCAATCTTACAGCACAAGCCATTGCT
GTTCTGTTCAGGAGTTTTCCCCCTCTGACCATATCTTTGAGGCTTTTTCC
CTTTTTTCTCCTTCACACGCCTTAGTGTCTCTGGTTTTATGTGGAGTTCC
TTGACCCACCCACACTTTAGCTTTGTACAAGGAGATAAGAATGGATCAAT
TTACATTCTTCTACGTGATAACTGCTAGTTGAGTCAGCACCATTTGTTGA
AAATGCTGTCTTTTTCCATTGGATGCTTTTAGCTCCTTTGTCAAAAATCA
AGTGACCATAGATGTGTGGGTTCATTTCTGGGTCTTCAGTTCTATTCCAT
TGATCTACCTGTCTGTTGCTGTACCAGTACCATGCAGTTTTTATCACAAT
TGCTCTGTAGTACAGCTTGAGGTCAGGCATGGTGATTCCACCAGAGGTTC
TTTTATTGTTGAGAATAGTTTTTGCTATCCTAAGTTTTTTGTTA

Query= MSMg01no291_i09.b1 MSMg01no291_i09.b1 CHROMAT_FILE:
MSMg01no291_i09.b1 PHD_FILE: MSMg01no291_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:20 2005
         (612 letters)



>mm_chr13_17168858_17169869
          Length = 1012

 Score = 1093 bits (565), Expect = 0.0
 Identities = 598/609 (98%), Gaps = 2/609 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttga-tttcttcttctcataaatgacaacagtcaaagactgctttgcactgct 63
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgacttt-ttcttctcataaatgacaacagtcaaagactgctttgcactgct 263

                                                                       
Query: 64  taatttgaattatccatcttcctgatgctgaagttattagcatcttagttgaacatcaaa 123
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taatttgaagtatccatcttcctgatgctgaagttattagcatcttagttgaacatcaaa 323

                                                                       
Query: 124 ctttgaaaaactgggtcaatattgttcaatgctggtataacagtgatacctcattacaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctttgaaaaactgggtcaatattgttcaatgctggtataacagtgatacctcattacaaa 383

                                                                       
Query: 184 acgaattagtatattctataaaacaaattcttacaatttttttcttgtgttcaagctatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acgaattagtatattctataaaacaaattcttacaatttttttcttgtgttcaagctatc 443

                                                                       
Query: 244 tttttaaataagattgtttttattgtttaactattggtctctagtagcaaaaaagtaatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttttaaataagattgtttttattgtttaactattggtctctagtagcaaaaaagtaatc 503

                                                                       
Query: 304 tctttacttgaacagtatctatacacttgctactgtgtcctatataagtctacagtcctg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctttacttgaacagtatctatacacttgctactgtgtcctatataagtctacagtcctg 563

                                                                       
Query: 364 tcccccccaactaaaacatttctaaagaaactaattttagcaatcaaggaagggtaaaca 423
           |   |  |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttagcaacaactaaaacatttataaagaaactaattttagcaatcaaggaagggtaaaca 623

                                                                       
Query: 424 ctacttttcttctacttagtgagtagatttcataagaaacaacctagttaaccaggtcaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 624 ctacttttcttctacttagtgagtagatttcataagaaacaacctagttaaccaggtaaa 683

                                                                       
Query: 484 tgtttttcccacacttataaagtgagacactcacagaagtggtttcctttgaactatact 543
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 684 tgtttttcccacacttataaagtgagacacccacagaagtggtttcctttgaactatact 743

                                                                       
Query: 544 gcttgcctgagccagtagtaaggctccctgaaactcaaaagtaaccttaacaatcctgaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcttgcctgagccagtagtaaggctccctgaaactcaaaagtaaccttaacaatcctgaa 803

                    
Query: 604 aagaatgga 612
           |||||||||
Sbjct: 804 aagaatgga 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)