Query= MSMg01no291_m08.b1 MSMg01no291_m08.b1 CHROMAT_FILE:
MSMg01no291_m08.b1 PHD_FILE: MSMg01no291_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:39 2005
(259 letters)
>mm_chr13_110776815_110777473
Length = 659
Score = 462 bits (239), Expect = e-135
Identities = 254/259 (98%), Gaps = 2/259 (0%)
Strand = Plus / Minus
Query: 1 atgaaagaatagggccaaacacatgggttaataaacaacatagg-tgaggaaggaggagc 59
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 458 atgaaagaatagggccaaacacatgggttaataaacaacat-ggctgaggaaggaggagc 400
Query: 60 ccaaggaggagctaagagatagtttctgaagatcagctttcaaatattttgcagttttgt 119
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 399 ccaaggaggagctaggagatagtttctgaagatcagctttcaaatgttttgcagttttgt 340
Query: 120 ggcaaactctttctgctactcaatttgctattttatttaatattttaggggagattattt 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ggcaaaatctttctgctactcaatttgctattttatttaatattttaggggagattattt 280
Query: 180 aataagtttcctttggctttttatgtccattgaaattttgaagcaacatattctgtggta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aataagtttcctttggctttttatgtccattgaaattttgaagcaacatattctgtggta 220
Query: 240 tgaaaaccaccttacttgg 258
|||||||||||||||||||
Sbjct: 219 tgaaaaccaccttacttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space: 162500
Effective search space used: 162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no291_m08.g1 MSMg01no291_m08.g1 CHROMAT_FILE:
MSMg01no291_m08.g1 PHD_FILE: MSMg01no291_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:39 2005
(227 letters)
>mm_chr13_110617680_110618306
Length = 627
Score = 387 bits (200), Expect = e-112
Identities = 223/236 (94%), Gaps = 10/236 (4%)
Strand = Plus / Plus
Query: 2 agctatagtggg-acatgcaaaagtatgtttagtgtaaaaagccagacagttgattgtgt 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 agctatagtggggacatgcaaaagtatgtttagtgtaaaaagccagacagttgattgtgt 251
Query: 61 agtgcgctggtaagccaatttttctcatcactccctctccgcgttcccagacaaaactag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agtgcgctggtaagccaatttttctcatcactccctctccgcgttcccagacaaaactag 311
Query: 121 gcaaaaaaaaaaaaaaaaaa---------tctgacctgtgttgtatgcttattgccatga 171
|||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 312 gcaaaaaaaaaaaaaaaaaaaaaaaaaaatctgacctgtgttgtatgcttattgccataa 371
Query: 172 tatattctccctgtgactgaggtcatactttgctctaatagctttttgttttttgg 227
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 372 tatattctccctgtgactgaggtcacactttgctctaatagctttttggtttttgg 427
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space: 134724
Effective search space used: 134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
