Query= MSMg01no293_l06.b1 MSMg01no293_l06.b1 CHROMAT_FILE:
MSMg01no293_l06.b1 PHD_FILE: MSMg01no293_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:12 2005
(326 letters)
>mm_chr13_9998945_9999669
Length = 725
Score = 600 bits (310), Expect = e-176
Identities = 319/322 (99%), Gaps = 1/322 (0%)
Strand = Plus / Plus
Query: 5 gaattctcaaaggaaaaaaccctttaaactaaatgaaaacaaatattactttattaaaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaaaggaaaaaaccctttaaactaaatgaaaacaaatattactttattaaaat 264
Query: 65 ttttaggaagtgggaaaaggaacattatataaattgcacacattcaaagagataaaatat 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 ttttaggaagtgggaaaaggaacattatataaattgcacacattcaaagagataaa-tat 323
Query: 125 taccttaggaaatagaaagatcaaaattaaagaaagttgaaataaataagatggaaatga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taccttaggaaatagaaagatcaaaattaaagaaagttgaaataaataagatggaaatga 383
Query: 185 gtaaatcaatagagaaaaaaaacctaaatatggttccttctgaatgatcaataaaatcat 244
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggaaatcaatagagaaaaaaaaactaaatatggttccttctgaatgatcaataaaatcat 443
Query: 245 catgtctctaagcaagttaactaatcagtgaaaaaggaatttacttctatcaggaataga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catgtctctaagcaagttaactaatcagtgaaaaaggaatttacttctatcaggaataga 503
Query: 305 tgaggagaaatagccataaata 326
||||||||||||||||||||||
Sbjct: 504 tgaggagaaatagccataaata 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 725
Length adjustment: 9
Effective length of query: 317
Effective length of database: 716
Effective search space: 226972
Effective search space used: 226972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no293_l06.g1 MSMg01no293_l06.g1 CHROMAT_FILE:
MSMg01no293_l06.g1 PHD_FILE: MSMg01no293_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:12 2005
(629 letters)
>mm_chr13_10145558_10146586
Length = 1029
Score = 1162 bits (601), Expect = 0.0
Identities = 622/629 (98%)
Strand = Plus / Minus
Query: 1 cataaatatgagaaactaaacctttaaaaggcttgctttaaatcaatccttccatcgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 cataaatatgagaaactaaacctttaaaaggcttgctttaaatcaatccttccatcgcat 949
Query: 61 gtgcattgcaaattaattttggaatttattcctattcattcattcattcattcattcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 gtgcattgcaaattaattttggaatttattcctattcattcattcattcattcattcatt 889
Query: 121 tatttattttgtttttcaagacagggtttctctgtatagccctggctgtcctggatattt 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 888 catttatttcgtttttcaagacagggtttctctgtatagccctggctgtcctggatatgt 829
Query: 181 ttttcaacagaagtcagctgtagcacttttaaaatccagtagctcactgttgttgttctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ttttcaacagaagtcagctgtagcacttttaaaatccagtagctcactgttgttgttctt 769
Query: 241 cgtgatgttcagagaagcacaagacagaatacaaaggtcctctgctttaggcctttctag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 cgtgatgttcagagaagcacaagacagaatacaaaggtcctctgctttaggcctttctag 709
Query: 301 agaaaaaccaatcaaattcctttcatggaaaacctaggagataacacacttcagaaatat 360
|||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 708 agaaaaaccaatcaaattcctttcatggaaaacctaggagataatatagttcagaaatat 649
Query: 361 tgttggctggattgatagctgagtggtcatctgcttgcctgagtatataaggacctggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tgttggctggattgatagctgagtggtcatctgcttgcctgagtatataaggacctggat 589
Query: 421 caatatccagcacagacagaaaagaaagagagaaggaaaactagttatatctgtgtcttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 caatatccagcacagacagaaaagaaagagagaaggaaaactagttatatctgtgtcttt 529
Query: 481 attcttcacaacaaaactaagaggaatgcaatactattttcattgaataaacaataaaag 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 actcttcacaacaaaactaagaggaatgcaatactattttcattgaataaacaataaaag 469
Query: 541 caaagctcagagtgaaattatatatctttactcagttgtagagtcttccagattgctgtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 caaagctcagagtgaaattatatatctttactcagttgtagagtcttccagattgctgtg 409
Query: 601 tgaatataaaacggagcatctctacagaa 629
|||||||||||||||||||||||||||||
Sbjct: 408 tgaatataaaacggagcatctctacagaa 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
