BAC Information

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BAC

Clone NameMSMg01-294D07
Chromosome13 (Build37)
Map Location 86,486,869 - 86,487,158
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435373, LOC675662, Cox7c, LOC100042887, LOC100042893
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294D07.T7 (MSMg01no294_d07.b1)MSMg01-294D07.TJ (MSMg01no294_d07.g1)
ACCAG422439AG422440
length740742
length of high quality
(start - end)
194 (131 - 324)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no294_d07.b1 PHD_FILE: MSMg01no294_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:50 2005CHROMAT_FILE: MSMg01no294_d07.g1 PHD_FILE: MSMg01no294_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGC
GGAATTCATTGTTTTTATCAAAAAAGTAGTACTCCATTGTATAAATGTAC
CATATTTTCTGTATCCATTCCTATGTTGAGGGACATATGAGTTGTTTTCA
GTTTCTGGCTATTATAAATATAGTGAACGTAGTGGAGCATGTGTCCTTGT
TATATATTGGAACAATTTTTGGTTATATGCCTAGGAGTGGTATAGCTGGG
TCCTCAGGTAATACTATGTCCAATTTTCTGAGGAATCACCAGACTGATTT
CCTCTTTCTCCACATCCTTACCAGCATGTTCTGCCACCTGAGTTTTGAAT
CTTATCCATTCTGACTTTTTTTTTTGCAGAATCTCACCGGTTGTTTGATT
TGTATTTCCTTGATGAGTAAGGATGTTGAACATTAATAAAGATGCTTTTC
GACCATTTGAGTTTCCTCAGTTGAGAATTCATTGTTTAACTCTGTACCCT
ATTTTTAATATGGTTATTTTATTGTCTGGAGTTGTATTTCTTGAGTTCTT
TGTATATATTGGATACTAGACATCTATTGGATGTAGGATTGGTAAAGATC
TTTTGCTGCCATTTTGTCCTATTGACAGCTCTGTAATTCAGCTTGAGGTC
AGGGTTGTGATTATCCCAGAAATTATTTTATTTGTTGAGAATAGTTTTCA
CTATCCTGGGTTTTTTTGTTATTTCAGATAAATTTCCAAA
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAATTAAAATCAGAAAATTGAATAA
TACAAATGGTTCTCAAGTACCTGGGATCTTGGTACTATGTGAATAAAACA
CATGGCAAATAAATCTTCTATGTGTTTTTTGTGCTAAGAATCATTTCTGT
ACAGAAACAAAAGAGGCTGGAGCAACCTCCCAACTGTGCAACAACTTTCA
TTACAAAACACAATCATAAATATTTATAGGAACCTAGGAAATACTGCATA
AGTCAGGCACTCTTAACTTAGTATATTTCAGAAGGTGTTTACATATATAA
ACAAACACACAGAGACTCTTTTTTATAACACACACACCAATGAGTATACA
GACATGCACACACATGTGAACACAAGTGTACATGCATGAACACTCACAAA
CACTTGAACACACGCACACATACACAAAGACATGTATTCCAAACAGTTTT
TTTTAAAAAATAACTATCATACTTATAAAATTGTCTGAGGTTTGTGTTGC
CTTTTATGACAAGAGAAATTTTTAAATATCTGTTAAAAATTTAATACCTT
ATCAATTTATACTGGATTTTAATTTTATTTGATGGATTCATGTAGTTTTT
CACCGTTTAGTGTGTTGTCTAACTTTGCCTAAAGGCTTTTTTAAAGACAG
GTTTTCTCACTGAATATGATGTTTACCATTATATCTAGGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_d07.g1 MSMg01no294_d07.g1 CHROMAT_FILE:
MSMg01no294_d07.g1 PHD_FILE: MSMg01no294_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:50 2005
         (290 letters)



>mm_chr13_86486669_86487358
          Length = 690

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattaaaatcagaaaattgaataatacaaatggttctcaagtacctgggatcttggtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaattaaaatcagaaaattgaataatacaaatggttctcaagtacctgggatcttggtac 431

                                                                       
Query: 61  tatgtgaataaaacacatggcaaataaatcttctatgtgttttttgtgctaagaatcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tatgtgaataaaacacatggcaaataaatcttctatgtgttttttgtgctaagaatcatt 371

                                                                       
Query: 121 tctgtacagaaacaaaagaggctggagcaacctcccaactgtgcaacaactttcattaca 180
           |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 370 tctgtacagaaacaaaagaggctggagcaacctccctactgtgcaagaactttcattaca 311

                                                                       
Query: 181 aaacacaatcataaatatttataggaacctaggaaatactgcataagtcaggcactctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaacacaatcataaatatttataggaacctaggaaatactgcataagtcaggcactctta 251

                                                             
Query: 241 acttagtatatttcagaaggtgtttacatatataaacaaacacacagaga 290
           ||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 250 acttagtatatttcagaaggtgtctacatatataaaccaacacacagaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)