BAC Information

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BAC

Clone NameMSMg01-294P18
Chromosome13 (Build37)
Map Location 67,838,389 - 67,838,702
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137
Downstream geneZfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294P18.T7 (MSMg01no294_p18.b1)MSMg01-294P18.TJ (MSMg01no294_p18.g1)
ACCAG423008AG423009
length738741
length of high quality
(start - end)
318 (46 - 363)292 (78 - 369)
definitionCHROMAT_FILE: MSMg01no294_p18.b1 PHD_FILE: MSMg01no294_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:47 2005CHROMAT_FILE: MSMg01no294_p18.g1 PHD_FILE: MSMg01no294_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTCATGGGTCTCCTTTAAGAGTAAATATGTTGACTGAAGAAGT
AATGGATAAAACTTCTCAGTTAAATTGCCTTATGTTATTTCTGTGGATGA
GTGATCAGTGTGGGGAAATGATGAGTAGCCTTTGTTAATCTTTATAGCTT
TACTCAACACAAAACAGTCCATACTGGAGTCAGGTCTTAAGGAGTTCTTA
AAAAGTATGTATTTCTTCAGACCTTAAAAGACATCAATTGATTCATTCCG
AATACAAATTGCGTAAGTGTGTGGAATGTGGTAAGAACTTGACCAATCCT
TCAGATATATCCTTTTTTTATCGCTCTATACCACAGACAATTAAGTTAAT
TATTTTGGAATGTCAACACAAACATCTAATGTCTAGCATCACCAATTCGA
AAAATGTCACCAGAGAACAGTAGAGACTTCTCTTTGCTGTAACCTCCCCA
CCAATGTCCTTAATCTTGAATCTTGCATGGATGGATGAGTTTCTTTCTTA
ACTATTAATAGGAAATGAAGCTGTTGCCATATTGTAACTTGGCCTTTTAG
GTGCCCAGATTATGAGATCTGGGCTGTGATATGATGACCGTCATTACTTC
CTAGTCACCCAATCTCTTGTCATAACATTTCTCCTAGCTGTGAAGGAAGC
TCTGTAAACTCATATCTCACACCAAGTTGGTAGTTGGT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTTTGAGGGATGCTGTCAAT
GAAGACCTAGCGGCAATAGAGAAGTCCATTGACGCTTTAGAAAAATCTTT
GACCTCCCTGTCTGAGGTAGTTTTACAGAACAGGAGAGGTCTTGATTTGT
TGTTCCTAAAGGAAGGAGGACTGTGTGCTGCCCTTAAAGAAGAGTGCTGC
TTCTATGCAGATCATACAGGAATAGTTAGAGACTCTATGCAGAAACTGAG
AGAAAGATTAGAGCGAAGGAAACGGGAACGGGATGCTCAACGGGGGTGGT
TTGAGTCGTGGTTTGAATCTTCGACCATCTTGCACAACTTCTTTAATTTC
CGCTGTAGCCGGACCAATCCTTATGATATGCTTAGCTTTAGTTTTCGGCC
CTTGTATAATAAATAGAGGAATGGCTTTCATCCAGAGTAAAATTGATACA
GTAAAACTCATGGTTCTTCAAAGGCAATATCAACCTATAGTTCAGGTAGA
TGAAGAGTTAGGGGACACCAATCTCTAAAATTCTATGATTAGAATTAGTC
TAAACAGAAGAAGAGGGGAATGAAAGGAAATAAAACTGTAATTCATGTAA
TGTATGTTAAATAGCCCAAAGAGTTGTTTCTGAGCTTTGAAACCTGGGGC
TGAGAACATAGCAGAACAGACCAGGACATGCCCGGGCAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_p18.b1 MSMg01no294_p18.b1 CHROMAT_FILE:
MSMg01no294_p18.b1 PHD_FILE: MSMg01no294_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:47 2005
         (318 letters)



>mm_chr13_67838186_67838903
          Length = 718

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctttcatgggtctcctttaagagtaaatatgttgactgaagaagtaatggata 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggaattcctttcatgggtctcctttaagagtaaatatgttgactgaagaagtaatggata 458

                                                                       
Query: 64  aaacttctcagttaaattgccttatgttatttctgtggatgagtgatcagtgtggggaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aaacttctcagttaaattgccttatgttatttctgtggatgagtgatcagtgtggggaaa 398

                                                                       
Query: 124 tgatgagtagcctttgttaatctttatagctttactcaacacaaaacagtccatactgga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgatgagtagcctttgttaatctttatagctttactcaacacaaaacagtccatactgga 338

                                                                       
Query: 184 gtcaggtcttaaggagttcttaaaaagtatgtatttcttcagaccttaaaagacatcaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtcaggtcttaaggagttcttaaaaagtatgtatttcttcagaccttaaaagacatcaat 278

                                                                       
Query: 244 tgattcattccgaatacaaattgcgtaagtgtgtggaatgtggtaagaacttgaccaatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgattcattccgaatacaaattgcgtaagtgtgtggaatgtggtaagaacttgaccaatc 218

                         
Query: 304 cttcagatatatcc 317
           ||||||||||||||
Sbjct: 217 cttcagatatatcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)