BAC Information

Click to search

BAC

Clone NameMSMg01-295I15
Chromosome13 (Build37)
Map Location 25,739,279 - 25,739,565
singlet/doubletsinglet
Overlap genenone
Upstream gene6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295I15.T7 (MSMg01no295_i15.b1)MSMg01-295I15.TJ (MSMg01no295_i15.g1)
ACCAG423404AG423405
length752748
length of high quality
(start - end)
372 (381 - 752)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no295_i15.b1 PHD_FILE: MSMg01no295_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:30 2005CHROMAT_FILE: MSMg01no295_i15.g1 PHD_FILE: MSMg01no295_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAACTGACGAATATCAAATGGCTGAGAAGTACCTAAAGAAAT
CTTCAACAACCTTAGTCTTCAGCGAAATACAAATCAAAACAACCCTGAGA
TTACACCTCACACCAGTCAGAATGGCTAAAATCAAAAACTCAGGTTACAG
CAGATGCTGGTGAGGATGTAGATAAAGAGAAACACTCCTTGATTTCTGGT
GGAATTGCAAGCTTGTACAAAGACTCTGGAAATCATTCTGGTGGTTCCTC
AGAAAATTAAACATAGTATTACCTGAGGGCCTGGCAAAACCAATCCTGGG
TATATACCCTTATTATGCTCTAACATGCAGTAAGCATACATGCTCCACTA
TGTTCATAGCAGCCTTATGTATAATAGATAGTAGCTGGAAATAACCCAAA
TGTCCTTCAACAGAGGAATGGATACAAAAAATATGGTACATTTACGCAAT
GCAGTACTACTCAGCTATTAAAAGTGATGAATTTATGAAATTCTTAAGCA
AATGGATAGAACTAGAAAATATCATCCTTGAGTGAGGATCCACCCAACTG
CAAAAGAACACACATAGCATGCATTTACTGTTAAGTGGATATTATCCCAA
AAGCTCCAAATAACCAGGATACAATTCGCAGACCAGATGAAGCTCAATAA
GAAGGAAACCCAAAGTGTGCTTTTGTCCTTCTTAGGAGAACAAAATACTC
AC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCTCTGAGAAATTTAATATTG
ACTTTTTTCCTTGAGAAATGTACCATCATTGATTTAATCCAAAGCACATT
GCTTACATAATTGGGTTTTTATTTTACTGAAACAATTCTGGACTAGCTAT
GAAGAAGAGACTAAAGGGTGGGAGTAAAGATTCATAGGCATGGGTGGAAG
AGCGGGAAGAGGTGATGGAAAGACCAATTACCACGCTACTTCTGTAGTCT
AGAGAACAGGTGGATATTTCAGGGGTAAAAATCAGAAAAGTCTAAGGATG
TAATGGCTTTTCTTTTATGACCACCACCCCATCATGACCCTTGTTGGAGA
ACTTCAAGTTTCACTTTTCTTAACAAATAATGAAGTTCCTGCTTTCTTCA
TTTCACTCTGAATCTGATGAAGTCATTCACGCATCTTTAATTTATGATAG
TAATATAGTAGGAGGTGAAATGTTCTCATTTATATTACATACTGGATGAC
CTCTTTACATAGTGATATATATGAGGTCAGTGTGGCAGGGAGGAAAATGT
CTACTGTGGAGTTGGGAGGGTTTGCCTAAAATGTCATAACGTAGGAAAAT
TTCTTGCCTGCCCTGTTTGTTTTCGCCCCCACGAAAGCTTTCACTTTTGA
CTACCTTGGCTCCACAATTCTGATCTGAATCTGAACTCCATGCCATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_i15.g1 MSMg01no295_i15.g1 CHROMAT_FILE:
MSMg01no295_i15.g1 PHD_FILE: MSMg01no295_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:30 2005
         (286 letters)



>mm_chr13_25739079_25739765
          Length = 687

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%), Gaps = 1/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcctctgagaaatttaatattgactttttt-ccttgagaaatgtaccatcattgattt 59
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tctcctctgagaaatttaatattgactttttttccttgagaaatgtaccatcattgattt 260

                                                                       
Query: 60  aatccaaagcacattgcttacataattgggtttttattttactgaaacaattctggacta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatccaaagcacattgcttacataattgggtttttattttactgaaacaattctggacta 320

                                                                       
Query: 120 gctatgaagaagagactaaagggtgggagtaaagattcataggcatgggtggaagagcgg 179
           |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||
Sbjct: 321 gctatgaagaagagactaaagggtgggaataaagattcataggcataggtggaagagagg 380

                                                                       
Query: 180 gaagaggtgatggaaagaccaattaccacgctacttctgtagtctagagaacaggtggat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagaggtgatggaaagaccaattaccacgctacttctgtagtctagagaacaggtggat 440

                                                          
Query: 240 atttcaggggtaaaaatcagaaaagtctaaggatgtaatggcttttc 286
           ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 atttcaggggtaaaaatcagaaaaggctaaggatgtaatggcttttc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 687
Length adjustment: 9
Effective length of query: 277
Effective length of database: 678
Effective search space:   187806
Effective search space used:   187806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)