BAC Information

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BAC

Clone NameMSMg01-295J02
Chromosome13 (Build37)
Map Location 53,556,104 - 53,556,420
singlet/doubletsinglet
Overlap genenone
Upstream geneDiras2, LOC100040572, Syk, Auh, Nfil3, Ror2, Sptlc1, LOC100040421
Downstream geneMsx2, EG432760, E130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295J02.T7 (MSMg01no295_j02.b1)MSMg01-295J02.TJ (MSMg01no295_j02.g1)
ACCAG423425AG423426
length738739
length of high quality
(start - end)
323 (44 - 366)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no295_j02.b1 PHD_FILE: MSMg01no295_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:32 2005CHROMAT_FILE: MSMg01no295_j02.g1 PHD_FILE: MSMg01no295_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAAGTTCAGGATCATATTCCCCTCAGCCACCCCATGGGATTTCCTA
GTTGTCTCCTCTCTGCTCTCACTGCTAGCTAAACAAAGAGAAACCCAACC
ACAAAGACCAGCCAGGCTATGCACAGCAGCCTTTGGACTTTCCCTAAATG
GCCAATTTAACCTCAATAACAGCCCCATCCATCTATCAGCACCACCTTCT
AGGTCACTTTCTGAGAGGGGACCTTAGGAGGCACCACGCAGTTCATACAG
AATTTCCTTACAAAGTCAGGAGTGATTTCAGCATTGAAATAAAGATGGGC
AAAACTTTGCCCATATTTTTCCCCCTCACCCCCGGCATGCCCAGCAGTAC
AGAAACCCCTTTGAGGAACCTGTATACAAGAGAAAGAAAGAAAGAATGGG
TGAGCGAATGAAGGGACCAGATATAACGCAAGCCAGCTAAAACGTACTTT
TTACAGCTGCCCACCTTGGCTCTGCCTTTGGAAGGCCAGAGTTAGTTTCT
ATATGATAAAGATAATATTTCACATTGAACATAGGGCATTTTAGATACTA
AAACTTATTCTGTAATATATGTGTCTATAAATGCGTGTGTGTGTGTGTGT
AAGTATATGGCAGCTGGGAAACTGTAGTGTACGTCTGTAATCCCAACCTC
CTGAGGCAGGATGATCAGGAGCTCAAGGTCGCTACCTG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTCCCGCATTCAACCACAAAGGGG
CCATGATAGGGAGCCAAGCTACATCTTGAGCTGGCAGAAGAGCTTGGTTC
CATCCACTTGCTAATAGCTTTTCAGTCAAAATCAGAGTTGTAAGACCAAG
GTTGCAGGGAGTCACTGGGGTCAAGCAATGTATGGCAAAGCCTGATTCTC
TGCAGAGAGTTCCTGTGAAGTTGTCCTTGAAGCTGTAAGCGTGAATCATG
TCATGATGGAGACCCAAGTATGATGGATATGACCAAGAAGTGAGATGTTC
CCCAAAGAACACTATTTGCTCNGATCCCCCCCCCCCCAAGACATCACACA
GGCTACAAGCAACAGAGTTTGAGGAACAGGAAAACACAAACCTTCTGGAG
GCCGGACGTCACACAGGCTACAAGCAACAGAGTTTGAATAACAGGGGTAC
CCAAACCTGCTGGAGCCCAGGTGATGCCATCAAGAGCCCCAGCTGCCAGA
CATGGTGCTACAGGGTTTAGTGTTTGCCCTGCTGAGTTTCTGTCTTGCTT
TAGTCAGATCTTTCCTTGCTATTCCTTTGTGTCTTCCCTTTAGAATGGAA
ATGCTCTACAAGGGCTCTTATTTAACTGTTATATGGGCTTAATACGAGAC
TCTGACCTTTGATTGTCTGAACAGCGTCAGACCTGCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_j02.b1 MSMg01no295_j02.b1 CHROMAT_FILE:
MSMg01no295_j02.b1 PHD_FILE: MSMg01no295_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:32 2005
         (323 letters)



>mm_chr13_53555901_53556623
          Length = 723

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcaagttcaggatcatattcccctcagccaccccatgggatttcctagttgtc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcaagttcaggatcatattcccctcagccaccccatgggatttcctagttgtc 263

                                                                       
Query: 64  tcctctctgctctcactgctagctaaacaaagagaaacccaaccacaaagaccagccagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcctctctgctctcactgctagctaaacaaagagaaacccaaccacaaagaccagccagg 323

                                                                       
Query: 124 ctatgcacagcagcctttggactttccctaaatggccaatttaacctcaataacagcccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctatgcacagcagcctttggactttccctaaatggccaatttaacctcaataacagcccc 383

                                                                       
Query: 184 atccatctatcagcaccaccttctaggtcactttctgagaggggaccttaggaggcacca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atccatctatcagcaccaccttctaggtcactttctgagaggggaccttaggaggcacca 443

                                                                       
Query: 244 cgcagttcatacagaatttccttacaaagtcaggagtgatttcagcattgaaataaagat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cgcagttcatacagaatttccttacaaagtcaggagtgatttcagcattgaaataaagat 503

                            
Query: 304 gggcaaaactttgccca 320
           |||||||||||||||||
Sbjct: 504 gggcaaaactttgccca 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)