BAC Information

Click to search

BAC

Clone NameMSMg01-297I22
Chromosome13 (Build37)
Map Location 119,853,042 - 119,853,676
singlet/doubletsinglet
Overlap genenone
Upstream geneMrps30, LOC668309, LOC100041278, Fgf10
Downstream geneLOC100041298, LOC100041757, Nnt, Paip1, LOC100041802, 4833420G17Rik, 3110070M22Rik, EG633640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297I22.T7 (MSMg01no297_i22.b1)MSMg01-297I22.TJ (MSMg01no297_i22.g1)
ACCAG424855AG424856
length729729
length of high quality
(start - end)
637 (68 - 704)501 (76 - 576)
definitionCHROMAT_FILE: MSMg01no297_i22.b1 PHD_FILE: MSMg01no297_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:01 2005CHROMAT_FILE: MSMg01no297_i22.g1 PHD_FILE: MSMg01no297_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGACCGCGG
AATTCAGGAGGTATACGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGT
CTACAGAATGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCCTACCT
CGAAAAAAAAAAAAAAAAAAAAAAAAAAGATGAAACACTACCTCTCTCTC
CAGGCAAGTGAAAGTACCCTTGTAAACACATCATTTCTTCTTTTAAAAAC
TCACTTTCGGAAACCCTTGAGTAAAAGAAAGTTCCTGAGTTTGGGGGCTC
TGTCTGGTTCTAATGGTAAAGTGTAGCCAAAGCAAGGGGCCGATTTCAGC
AGCTTTAAAAAGAGTTAGTTAATTAAAATCACCCTGGTCTTAACTTGCCC
TCTTTTTTTTTTCTTTGTCCCCTTAGTTGGCCCAAGTTGTCCATTAGTAT
AATATTAAGTAAATGAAAGCCAAAAGGGGAAATGAAGCAAGGTTCTCTCT
ATGTGTGTTTCTAAGATCGGCAATGCATGCTCCAAACCATGTCTGCCAGA
GCCAAAAGTATGAAAATAAAGCAGCTTTTTACCCCCTCTCTGATTGAAAA
CTACTTGAATTCAGTGCTTGCTCCACATACCAGAAGCAATTATTATCCTT
GGAGTTTACAAAGAAATACCAAAGCAGACAATGCTAAAATCCGGCGGGTT
TCTACATACAAAGTTTTGAAGAGCCTCTT
NCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCAT
GAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGA
TCATGTGGTTATTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATG
GATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTT
GTCAGGATGGATGATTGCTTTAATGTGTTTTTGGATTCGGTTAGCGAGAA
TTTTATTAAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAG
TTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTCATAGT
GGCTTCATAAAATGAGTTGCCTAGAGTACCTTCTACTTCTCTCTTGTGAA
ATAGTTTGTGCAGAACTGGAAATAGATCTTCTTTGAAGGTGTGATAGAAC
TCTGCACTAAACCTGTCTGGTCCTGGGCTTTTTTTTGGCTGGGAGACTAT
TAATAACTGCTTCTATTTCTTTAGGGCATATGGGACTGTTTAGAAGGTCA
ACTTGATCCTGGTTTAACTTTGGTACCTGGTATCTGTCCAGAAATTCGTC
CATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTCTGTATAATG
ATCCGATGGCGATTTTGTACTCCCTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_i22.b1 MSMg01no297_i22.b1 CHROMAT_FILE:
MSMg01no297_i22.b1 PHD_FILE: MSMg01no297_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:01 2005
         (637 letters)



>mm_chr13_119852840_119853876
          Length = 1037

 Score = 1205 bits (623), Expect = 0.0
 Identities = 633/637 (99%), Gaps = 2/637 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcagatttctgagtttgaggccagcctggtctacagaatgagtttcaggacagccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 caggcagatttctgagtttgaggccagcctggtctacagaatgagtttcaggacagccag 262

                                                                       
Query: 61  ggctacacagagaaaccctacctcgaaaaaaaaaaaaaaaaaaaaaaaaaagatgaaaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 263 ggctacacagagaaaccctacctcgaaaaaaaaaaaaaaaaaaaaaaaa--gatgaaaca 320

                                                                       
Query: 121 ctacctctctctccaggcaagtgaaagtacccttgtaaacacatcatttcttcttttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacctctctctccaggcaagtgaaagtacccttgtaaacacatcatttcttcttttaaa 380

                                                                       
Query: 181 aactcactttcggaaacccttgagtaaaagaaagttcctgagtttgggggctctgtctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactcactttcggaaacccttgagtaaaagaaagttcctgagtttgggggctctgtctgg 440

                                                                       
Query: 241 ttctaatggtaaagtgtagccaaagcaaggggccgatttcagcagctttaaaaagagtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctaatggtaaagtgtagccaaagcaaggggccgatttcagcagctttaaaaagagtta 500

                                                                       
Query: 301 gttaattaaaatcaccctggtcttaacttgccctcttttttttttctttgtccccttagt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 501 gttaattaaaatcaccctggtcttaacttgccctcttttttttttctttgtctctttagt 560

                                                                       
Query: 361 tggcccaagttgtccattagtataatattaagtaaatgaaagccaaaaggggaaatgaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggcccaagttgtccattagtataatattaagtaaatgaaagccaaaaggggaaatgaag 620

                                                                       
Query: 421 caaggttctctctatgtgtgtttctaagatcggcaatgcatgctccaaaccatgtctgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaggttctctctatgtgtgtttctaagatcggcaatgcatgctccaaaccatgtctgcc 680

                                                                       
Query: 481 agagccaaaagtatgaaaataaagcagctttttaccccctctctgattgaaaactacttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagccaaaagtatgaaaataaagcagctttttaccccctctctgattgaaaactacttg 740

                                                                       
Query: 541 aattcagtgcttgctccacataccagaagcaattattatccttggagtttacaaagaaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aattcagtgcttgctccacataccagaagcaattattatccttggagtttacaaagaaat 800

                                                
Query: 601 accaaagcagacaatgctaaaatccggcgggtttcta 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 801 accaaagcagacaatgctaaaatccggcgggtttcta 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)