BAC Information

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BAC

Clone NameMSMg01-298F12
Chromosome13 (Build37)
Map Location 18,491,127 - 18,491,307
singlet/doubletsinglet
Overlap genenone
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
Downstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298F12.T7 (MSMg01no298_f12.b1)MSMg01-298F12.TJ (MSMg01no298_f12.g1)
ACCAG425420AG425421
length796812
length of high quality
(start - end)
184 (182 - 365)241 (128 - 368)
definitionCHROMAT_FILE: MSMg01no298_f12.b1 PHD_FILE: MSMg01no298_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:00 2005CHROMAT_FILE: MSMg01no298_f12.g1 PHD_FILE: MSMg01no298_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCTTCCCCCTACNTTTCTTACTACCAAAACCCCCCCATTCTCTCCCAT
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAGCCGC
GGAATTCATTCATTCCCAAAAATACTTTCTAAATGAACACCAGACACAGC
TGCTGAGTGTATGGAGTAGACCCCCTAGCAAGGGGACACATTGAGCTAGC
AGTCAAGCAAAGAATGGAAATCACAGAATTGATCTCAGGTCATCTCCAGG
GAACATAATAAACAGGATAGGACCAAGATGGCCCTTTCCATTTCCACAAA
CTTTGTGTATGCTACTCTGAATATGGAGAGCTTCAATAGAGGTTAATAAG
TTATCTAATTTAAAAGTTTGTTTCTGCCCGGTCCCACTTCATGTAAGTCA
AAGTAATTTGCTTACTTGCTTCATCCTATGAAAAGACAATTTTGGAAATT
CTTGAATAAGAGTGCTGGGGGATGGGTCAGATGCTAGAGTGCTTGCTGTG
AAGCAGGACGACCTGAGTTTTATCCCAGGCACACGTGTGAAAGTGGATAC
AATTGGATATCTGAAGCTACTGGCCATCCTACGCCAATTGCCATACTCCG
TGATCTAGTGAGAAACCCTGTTTCAAAAAACAAGGCCTATGGTTGCCGAG
AATCCCCCTCTAAGGTTGTGATCTGGAACTTTCACGTACTCATATTCTCA
CTCAACCTCTGTTTGTGCATTTGCTCATATTTGATTCCCTCTTCTATATG
AAACCTTTTTACAAAACCCCCCCTGAATCTTCCCTCCTTGTGACAA
CTAAACCCCTTCTCCTTTACCCCCGTCCCACCCCACCACCAACANTTNTT
CTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTAATTTCCGAAAAAAATTCTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAATAAATGTTCCCCAACCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCCGAGATTCCACCTCACACTAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAGGA
GGAACACTCCTCCATTGCTGGTGGGATTTCAAGCTTGTACAATCACTCTG
GAAATCACTCTGGCGGTTCCTTTTTTTTTTGGACATAGTACTACCTGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGAGGTCCCAACCGGT
AAGAAGAACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGTAAGAATCCAGATGCCCCTCAACAGAGGAATGGACACACA
AAATGCGGTATATTTACACAATGGAATACTACTCAGCTATTACCCCCAAT
GATCTTATGAAATTCCTACGCCCATGCACGGACCTGGAGGCCATCATCCC
GAGTGATGTAACACTTTCACGTAGGAACTCTACCAATATGTACTCATTGA
TTAACTGGATTATATCCCCCCAACTCCTGGAAATCCCCACATATTACTAT
TCAAAATTGTTCTAATGCACTGATATTCTAAGACTAATTTTTTACCTAAC
TTGTTGGTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_f12.b1 MSMg01no298_f12.b1 CHROMAT_FILE:
MSMg01no298_f12.b1 PHD_FILE: MSMg01no298_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:00 2005
         (184 letters)



>mm_chr13_18490923_18491507
          Length = 585

 Score =  311 bits (161), Expect = 1e-89
 Identities = 176/181 (97%), Gaps = 1/181 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   acacattgagctagcagtcaagcaaagaatggaaatcacagaattgatctcaggtcatct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 acacattgagctagcagtcaagcaaagaatggaaatcacagaattgatctcaggtcatct 264

                                                                       
Query: 65  ccagggaacataataaa-caggataggaccaagatggccctttccatttccacaaacttt 123
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccagggaacataaaaaaacaggataggaccaagatggccctttccatttccacaaacttt 324

                                                                       
Query: 124 gtgtatgctactctgaatatggagagcttcaatagaggttaataagttatctaatttaaa 183
           | ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 gggtatgctactctgaatagggagagcttccatagaggttaataagttatctaatttaaa 384

            
Query: 184 a 184
           |
Sbjct: 385 a 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 585
Length adjustment: 8
Effective length of query: 176
Effective length of database: 577
Effective search space:   101552
Effective search space used:   101552
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)