Query= MSMg01no299_n13.b1 MSMg01no299_n13.b1 CHROMAT_FILE:
MSMg01no299_n13.b1 PHD_FILE: MSMg01no299_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:53 2005
(576 letters)
>mm_chr13_40067837_40068811
Length = 975
Score = 949 bits (491), Expect = 0.0
Identities = 558/589 (94%), Gaps = 18/589 (3%)
Strand = Plus / Minus
Query: 1 cagtgagttgttagtgaggaatctt--gtttcttttaatccacagca-------caaagc 51
||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 829 cagtgagttgttagtgaggaatcttaagtttcttttaatccacagcacaatatgcaaagc 770
Query: 52 ataaatgacttacaacagtttgatgtactggagaaaagcagaattaatcataggaatgta 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ataaatgacttacaacagtttgatgtactggagaaaagcagaattaatcataggaatgta 710
Query: 112 taccgaaattaagcacagcaggtagatgcagaccctgtatggatttcagataacacacat 171
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 709 taccgaaattaagcacagcaggtagatgcagaccctgtgtggatttcagataacacacat 650
Query: 172 cagggcgctcacatacatgccgtctttctatttttttgctgtaaagaggtcttattggaa 231
| ||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 649 cggggcgctcacacacatgccgtctttcta-ttttttgctgcaaagaggtcttattggaa 591
Query: 232 aaaattaaatatggaaatgagaaatggaagatggagctggggagttacagatgatgtagt 291
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 acaattaaatatggaaatgagaaatggaagatggagctggggagttacagatgatgtagt 531
Query: 292 cactttttactttataaattcagtctcagctttgactctctaaccactgcaccaccctga 351
||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 530 cacttgccactttataaattcagtctcagctttga----ctaactactgcaccaccctga 475
Query: 352 ttttgactccagaatgtcagtgaccacagtgattacatttgatcaattgtc----ttttt 407
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 474 ttttgactccaggatgtcagtgaccacagtgattacatttgatcaattgtcttttttttt 415
Query: 408 ttttttttccagaaggatagaagttattcgttttggaaatttctctagttttgctttgag 467
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 414 ttttttttcctgaaggatagaagttattcgttttggaaatttctctagttctgctttgag 355
Query: 468 tcaatggcaaaatggatgtcttgctggtttaatgcaatcttgggctcacatggaaacctg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tcaatggcaaaatggatgtcttgctggtttaatgcaatcttgggctcacatggaaacctg 295
Query: 528 caggttgagagagtgctggatgagagagaaaccacaaaaggataccaaa 576
|||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 294 caggttgagagagtgctggatgagagggaaaccacaaaaggataccaaa 246
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_n13.g1 MSMg01no299_n13.g1 CHROMAT_FILE:
MSMg01no299_n13.g1 PHD_FILE: MSMg01no299_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:53 2005
(244 letters)
>mm_chr13_39900923_39901566
Length = 644
Score = 412 bits (213), Expect = e-119
Identities = 237/245 (96%), Gaps = 2/245 (0%)
Strand = Plus / Plus
Query: 1 tctcctcccataatcacaaacacagcttttaatatttaaatgtataaaggcaccttaaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tctcctcccataatcacaaacacagcttttaatatttaaatgtataaaggtaccttaaac 260
Query: 61 acatttgtttttctgcaatccaattgagacaccatgtttaacagacgcttggagatgcca 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 acatttgtttttctgcaatccaattgagacaccatgtttaacagatgcttggagatgcca 320
Query: 121 cagccaggtgagtctaaaccaaacatagagaccaaggaccacaggtcacgattttgtgtc 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagccaggagagtctaaaccaaacatagagaccaaggaccacaggtcacgattttgtgtc 380
Query: 181 ctcacttcac-aaaatgtatggcattccagaatacccattggcatggcttagaaagaaat 239
| |||||||| |||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 cccacttcacgaaaa-gtgtggcattccagcatacccattggcatggcttagaaagaaat 439
Query: 240 ctggg 244
|||||
Sbjct: 440 ctggg 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
