Query= MSMg01no299_p08.b1 MSMg01no299_p08.b1 CHROMAT_FILE:
MSMg01no299_p08.b1 PHD_FILE: MSMg01no299_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:01 2005
(647 letters)
>mm_chr13_47800828_47801874
Length = 1047
Score = 1158 bits (599), Expect = 0.0
Identities = 632/647 (97%), Gaps = 8/647 (1%)
Strand = Plus / Plus
Query: 5 gaattcttgtctttgtccgaaggttgaagaagtagcttgtgcagagaaaagaaaaaaata 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtctttgtctgaaggttgaagaagtagcttgtgcagagaaaagaaaaaaata 264
Query: 65 aataaaacaacaacaacaataacaaactccagttcagttcactatagcatcaccctggca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aataaaacaacaacaacaataacaaactccagttcagttcactatagcatcaccctggca 324
Query: 125 actgctttttgagatgctaggacatctgttgacaaggttgatgctctatatgcttgctgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actgctttttgagatgctaggacatctgttgacaaggttgatgctctatatgcttgctgg 384
Query: 185 ccactacggggaaccatgtgtggatgcagactcagtgctgaagaaggaatctgcaagggt 244
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccactacggggaactatgtgtggatgcagactcagtgctgaagaaggaatctgcaagggt 444
Query: 245 gttagtgagccaggatttggtcctttagttaacggatcattagagaatcgaggaggctct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttagtgagccaggatttggtcctttagttaacggatcattagagaatcgaggaggctct 504
Query: 305 aaagaagaggccagggcagtgggatgaggaatcccagggaggttagtgttggctcactga 364
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 aaagaagaggccagggcagtgggatgaggaaccccagggaggttagtgttggctcactga 564
Query: 365 gatttaattgccccg----catctcagtggtaaagcacttgcctagtatgtatgacaccc 420
|| ||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagttaattg----gggtgcatctcagtggtaaagcacttgcctagtatgtatgacaccc 620
Query: 421 taagaccaagccccatagggtcaaaaagcaataaccatagcaccagctgagtatccttgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagaccaagccccatagggtcaaaaagcaataaccatagcaccagctgagtatccttgt 680
Query: 481 ctttgaactcagcagccagctgaatgataacctggatgactgcttggcttcctttggttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttgaactcagcagccagctgaatgataacctggatgactgcttggcttcctttggttt 740
Query: 541 gaagcttatggggaaaacccccagatagcaagagaatctcaactctgcaccatcctgtta 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaagcttatggggaaaatccccagatagcaagagaatctcaactctgcaccatcctgtta 800
Query: 601 cattggtactgtcttatagacccttgacaaacttaactgaattaagg 647
||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 801 cattggtgctgtcctatagacccttgacaaacttaactgaattaagg 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_p08.g1 MSMg01no299_p08.g1 CHROMAT_FILE:
MSMg01no299_p08.g1 PHD_FILE: MSMg01no299_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:01 2005
(561 letters)
>mm_chr13_47961709_47962669
Length = 961
Score = 1033 bits (534), Expect = 0.0
Identities = 555/562 (98%), Gaps = 2/562 (0%)
Strand = Plus / Minus
Query: 1 attctttcagcaatgaacataatgatcagctgcctttctgagagactatcactagtgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 attctttcagcaatgaacataatgatcagctgcctttctgagagactatcactagtgtct 702
Query: 61 tccatgaatccggcaccatgtgtaataactgacagggaccttgttttatgtttgccacca 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 701 tccatgaatccggcaccatgtgtaataactgacagggaccttgttttctgtttgccacca 642
Query: 121 aaacagtggtaaattccactttttggaagcaggaggaagatagaaatggccatgaacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 641 aaacagtggtaaattccactttttggaagcaggaggaagatagaaatggccataaacaca 582
Query: 181 gcaatagtacatccacttagacttatccaatgccatctaactgatgagaagtccactctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gcaatagtacatccacttagacttatccaatgccatctaactgatgagaagtccactctt 522
Query: 241 catgttgagaaaatacaaagctagtgtctgtgttaactaaaagggcaaagtcaaacaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 catgttgagaaaatacaaagctagtgtctgtgttaactaaaagggcaaagtcaaacaaga 462
Query: 301 ataatttcccaatgcacgatgaaggactgatctgtgtagattgacctacca-ctgagata 359
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 461 ataatttcccaatgcacgatgaaggactgatctgtgtagattgaccta-gagttgagata 403
Query: 360 aagctccaaattcttgtctagttgaatcctacaaagagaaagaatagtaatttctgggat 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 402 aagctccaaattcttgtctagttgaatcctagaaagagaaagaatagtaatttctgggat 343
Query: 420 ggatgagctagagatagtcagtaatttaatctaattaaaaagctccaagtgaccattacg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggatgagctagagatagtcagtaatttaatctaattaaaaagctccaagtgaccattacg 283
Query: 480 gatggcccatatatgttctccagaaataagattcatgggagttgagatcaaatgtgtttg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gatggcccatatatgttctccagaaataagattcatgggagttgagatcaaatgtgtttg 223
Query: 540 agggttcctgtccctgcatgca 561
||||||||||||||||||||||
Sbjct: 222 agggttcctgtccctgcatgca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
