BAC Information

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BAC

Clone NameMSMg01-301G14
Chromosome13 (Build37)
Map Location 64,554,206 - 64,554,852
singlet/doubletsinglet
Overlap genenone
Upstream genePtch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk
Downstream geneLOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301G14.T7 (MSMg01no301_g14.b1)MSMg01-301G14.TJ (MSMg01no301_g14.g1)
ACCAG427621AG427622
length764765
length of high quality
(start - end)		651 (42 - 692)649 (70 - 718)
definitionCHROMAT_FILE: MSMg01no301_g14.b1 PHD_FILE: MSMg01no301_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:48 2005CHROMAT_FILE: MSMg01no301_g14.g1 PHD_FILE: MSMg01no301_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
GAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCTCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCATGAGG
TCCCATTTGTCAATTCTCGATCTTACAGCACAAACCGTTGCTGTTCTATT
CAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCAGTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGCTCCTTGATCCAC
TTAGATTTGACCTTAGTATAAGGAGATGAATATATATTTTTAAAAAATGG
TGCATATACCACCAGAATATAGTATAGAAGCCACCAGCTGGAGTCACACC
TGGTACGACTTCAGCATACACTGACCTGTCCTCATTGCAAAATGAGTGAA
TGGAGGCAGCTAATTTGTAAATTTCTCCCATAACTTTGTTTCCCAGTAGA
GAAGCATTCATTGCTGTCTCACTGCTAGCTGCATTAAAGAGCAGAGGAAG
AAAGGAAGTTGTGGAAATTCCTGAAGAAATAGAGGGAGCTTTAATTTTTG
TTGTGATCCAAGGAAAAGTTACTTATAATATTTGAACTTTAACTTTCTTC
AGGAGTCACAAATA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACTCTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGTTTATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCAACTGGATGGACCTGGAAGGCATCATCCTGAGTGAGGTT
ACACATTCACAAAGGAACTCACAAAATATGTACTCACTGATAAGTGGATA
TTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAACA
CATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCC
TTAGAAGTGGGAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_g14.b1 MSMg01no301_g14.b1 CHROMAT_FILE:
MSMg01no301_g14.b1 PHD_FILE: MSMg01no301_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:48 2005
         (651 letters)



>mm_chr13_64554002_64555052
          Length = 1051

 Score = 1251 bits (647), Expect = 0.0
 Identities = 647/647 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtttagctctgagccccattttttaatggggttatttgattttctggagtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtttagctctgagccccattttttaatggggttatttgattttctggagtc 264

                                                                       
Query: 65  caccttcttgagttctttatatatattggatattagtcctctatctgatttaggataggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caccttcttgagttctttatatatattggatattagtcctctatctgatttaggataggt 324

                                                                       
Query: 125 aaagatcctttcccaatctgttggtggtctttttgtcttattgacggtgtcttttgcctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagatcctttcccaatctgttggtggtctttttgtcttattgacggtgtcttttgcctt 384

                                                                       
Query: 185 acagaagctttgcagtttcatgaggtcccatttgtcaattctcgatcttacagcacaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagaagctttgcagtttcatgaggtcccatttgtcaattctcgatcttacagcacaaac 444

                                                                       
Query: 245 cgttgctgttctattcaggaatttttcccctgtacccatatcttcaaggcttttccccag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgttgctgttctattcaggaatttttcccctgtacccatatcttcaaggcttttccccag 504

                                                                       
Query: 305 tttctcctctataagtttcagtgtctctggttttatgtggagctccttgatccacttaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttctcctctataagtttcagtgtctctggttttatgtggagctccttgatccacttaga 564

                                                                       
Query: 365 tttgaccttagtataaggagatgaatatatatttttaaaaaatggtgcatataccaccag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttgaccttagtataaggagatgaatatatatttttaaaaaatggtgcatataccaccag 624

                                                                       
Query: 425 aatatagtatagaagccaccagctggagtcacacctggtacgacttcagcatacactgac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatatagtatagaagccaccagctggagtcacacctggtacgacttcagcatacactgac 684

                                                                       
Query: 485 ctgtcctcattgcaaaatgagtgaatggaggcagctaatttgtaaatttctcccataact 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgtcctcattgcaaaatgagtgaatggaggcagctaatttgtaaatttctcccataact 744

                                                                       
Query: 545 ttgtttcccagtagagaagcattcattgctgtctcactgctagctgcattaaagagcaga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgtttcccagtagagaagcattcattgctgtctcactgctagctgcattaaagagcaga 804

                                                          
Query: 605 ggaagaaaggaagttgtggaaattcctgaagaaatagagggagcttt 651
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggaagaaaggaagttgtggaaattcctgaagaaatagagggagcttt 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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