BAC Information

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BAC

Clone NameMSMg01-302B06
Chromosome13 (Build37)
Map Location 96,048,440 - 96,049,061
singlet/doubletsinglet
Overlap genenone
Upstream geneScamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp, Wdr41, Pde8b
Downstream geneZbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302B06.T7 (MSMg01no302_b06.b1)MSMg01-302B06.TJ (MSMg01no302_b06.g1)
ACCAG428081AG428082
length736744
length of high quality
(start - end)
641 (47 - 687)669 (76 - 744)
definitionCHROMAT_FILE: MSMg01no302_b06.b1 PHD_FILE: MSMg01no302_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:38 2005CHROMAT_FILE: MSMg01no302_b06.g1 PHD_FILE: MSMg01no302_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTTGAGCATTGTCTCAGTATTTATGATGCACATTATCTTTGTG
CACAGTGGGCCCTCCGTTTGTATTTATGCAATGAATAAACAGCATTGTGA
AATCACACACACACACACACACACACATATATATATATATATATATATGC
TTATATATCATGTACTTATTTAGTTTTCTGCTTTGGATTTTAGCAGGTGA
AGCCCTGTCTCCAGCCATACTTTCTTTAATAAAACATTGTCAGATTTGCT
AATCAGCTTGGTCTCCCCGCCCCCCCTGTTTTTCTCAACCTTTGTGCCAG
CATTTGGGTGAGTTTGACTTGATACATTTCCAATCTGTCTGTGCAGGAAC
AAGATTTGACATTGTTATGGATGGTAGCCAAAGAGCTCTTTCTTACCGAG
GAAAAATATTTCATAATTAAATGATTAATAGTTATAGATACCCTTGACTC
TCACAATTCCAAGTTGTACATTTCAAAGCGCTGGCAACTGGAGGCTTTGG
CCAAACTGGGTCCCACTTCTGATGTTCCTTGGCACCCTCCCAAGTTACCA
CTGGCCCTGTGTCTCTGTGGACAGTTTTGTTGTTGTTGGTTGTTTTCTGT
ATGGCGAATGACCCACAGCCTTGTCATCACCTGAGTTTCTATCAGAATGT
CTTTTCATTTCCAGGTCTTGAATTTGCCAAGCAAAG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAGTAGAAGTAGAAAGCAGGTGCT
AAACATGTAGAAAGATCATGTCTTTCTTACTGTGTAACCCACGTGACCAC
CTGGACTGTGTGCAGTGGTAAGGGACTCATGAATATTCAGATATTGACCA
AGCCACTTCGTTCTAGGAAATGGCCAACTTAAGAAATGGTCTCCACCAAC
AGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATAT
CCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAAC
CCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTCTCACCTGAGGA
ATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCA
TCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTC
AGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATG
TGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTAC
AACCACTCTGGAAATCAGTCTGGAGGTTCCTCAGAAAACTGGACATAGTA
CTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGC
CCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_b06.b1 MSMg01no302_b06.b1 CHROMAT_FILE:
MSMg01no302_b06.b1 PHD_FILE: MSMg01no302_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:38 2005
         (641 letters)



>mm_chr13_96048078_96049120
          Length = 1043

 Score = 1120 bits (579), Expect = 0.0
 Identities = 616/643 (95%), Gaps = 26/643 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatttgagcattgtctcagtatttatgatgcacattatctttgtgcacagtggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 ggaattcatttgagcattgtctcagtatttatgatgcacattatctttgtgcacagtggg 925

                                                                       
Query: 64  ccctccgtttgtatttatgcaatgaataaacagcattgtgaaatcacacacacacacaca 123
           ||||| ||||||||||||||||||||||||||||||||||||||                
Sbjct: 924 ccctctgtttgtatttatgcaatgaataaacagcattgtgaaat---------------- 881

                                                                       
Query: 124 cacacacatata--tatatatatatatatatgcttatatatcatgtacttatttagtttt 181
               ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 ----cacatatatgtatatatatatatatatgcttatatatcatgtacttatttagtttt 825

                                                                       
Query: 182 ctgctttggattttagcaggtgaagccctgtctccagccatactttctttaataaaacat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ctgctttggattttagcaggtgaagccctgtctccagccatactttctttaataaaacat 765

                                                                       
Query: 242 tgtcagatttgctaatcagcttggtctccccgccccccctgtttttctcaacctttgtgc 301
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 764 tgtcagatttgctaatcagcttggtctccccg-cccccctgtttttctcaacctttgtgc 706

                                                                       
Query: 302 cagcatttgggtgagtttgacttgatacatttccaatctgtctgtgcaggaacaagattt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cagcatttgggtgagtttgacttgatacatttccaatctgtctgtgcaggaacaagattt 646

                                                                       
Query: 362 gacattgttatggatggtagccaaagagctctttcttaccgaggaaaaatatttcataat 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gacattgttatggatggtagccaaagagctctttcttaccgaggaaaaatatttcataat 586

                                                                       
Query: 422 taaatgattaatagttatagatacccttgactctcacaattccaagttgtacatttcaaa 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 taaatgattaatagttatagatacccttgactctcacaattccaagttgtacatttcaaa 526

                                                                       
Query: 482 gcgctggcaactggaggctttggccaaactgggtcccacttctgatgttccttggcaccc 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gcgctggcaactggaggctttggccaaactgggtcccacttctgatgttccttggcaccc 466

                                                                       
Query: 542 tcccaagttaccactggccctgtgtctctgtggacagttttgttgttgttg---gttgtt 598
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 465 tcccaagttaccactggccctgtgtctctgtggacagttttgttgttgttgttggttgtt 406

                                                      
Query: 599 ttctgtatggcgaatgacccacagccttgtcatcacctgagtt 641
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttctgtatggcgaatgacccacagccttgtcatcacctgagtt 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1043
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1033
Effective search space:   651823
Effective search space used:   651823
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)