BAC Information

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BAC

Clone NameMSMg01-303I07
Chromosome13 (Build37)
Map Location 4,806,770 - 4,807,084
singlet/doubletsinglet
Overlap geneEG432723
Upstream geneCalm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303I07.T7 (MSMg01no303_i07.b1)MSMg01-303I07.TJ (MSMg01no303_i07.g1)
ACCAG429090AG429091
length744773
length of high quality
(start - end)
319 (43 - 361)154 (74 - 227)
definitionCHROMAT_FILE: MSMg01no303_i07.b1 PHD_FILE: MSMg01no303_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:27 2005CHROMAT_FILE: MSMg01no303_i07.g1 PHD_FILE: MSMg01no303_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATAGCTCTGTTAAAAACATTTGGACAGGACATTTAGGACAAGTTCAAG
TAAAGTTTATTGTTAAAATGCATTTGTGAAATGAGAAAGTGAGGATGGAG
CAATAGGTAGAGGTTGCAATGTTCTCAGTAATGGCTCACTTACTGTTTAT
AAATATTTTATTAAGAAAGAAAGGAAAGGATTTTCTTTTTTAAAAAAGAT
AATAGCTCTTGCTAAGTTTTCTAATGAGCTCCTGAAAGTCAATTTTAACA
TTATAAGATTGTAAATTTTATCATCCTTGATCAATTGTTATAAAATATTT
CCACATTCATGGTATATAGGAAATATTATAATATTCTTACATGATAAGTT
CCTAAGTAATTCTTCCATACTGACTTAAAAGCTGAGAATCATATTTGTCA
ATACTCAAATTAACTACATTTGTTGTACATTGGTCAGGCCTCATTAGTTA
GTTGTGCTGTTATGGAGACAAAATAATTCACAAAACCAAAGTAAGGAAGG
AATGTGCGGTGCTTTGGATAAGAAGGGTCCCATAAGCTCATATACTTGAA
GGTTTCGTCATCAGAAATTGGAACTGTCTGAGAAGGATAAGGAGGTGTGT
CTTTGTTAAAGTAGGTGTGGTCTTGTAAGAAATGTTTCATTGAGGGAAAG
ATTTGAGGTTTGAAAATCCCCCTCTCTATTTTAGCCTGCTGCCT
TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTTAACTTAGTAGTTTAATTCTGGA
AAACAGAAAGTTGAGTTGATCCTTAGAAGAGAAAGCAAGAGAAGTGGGGT
GGGTAGGATGGTTTAGAAGGCAACACCATTAGCTGCTCTTCTGAATGACC
TTGGCTCGATTCCATTACTAATATAGCAGCTCACACCTGTATGAATGTAT
AACACATAACAGCAATCCCAGAAAGTTCAATGCTATCTTCTGGCATTGCA
CACATGTGATGTACCGACTTATTTTTTCTAAATCCCCACACATACGTATA
TCATTATATATTTTTTTTTCCCCCCCCCCCCCCCGAGAAGATAATATAAT
ATATTATTTTATTGTCCCCCCCCATATAATAATAAATACTTTGCATGCGT
CTGCCTCTCCCGTTTCTTTTGCCTGTCTTCCCTCCCTTCCTTTTTTCCCC
CTCCCCCCCCTTTCTCCCTTTCCTTTTTCTCCCTTCTTCCCTCCCCCCCC
TCCCCTCCTCGTCTTTCTTTTCTTCCCCCACTCTCCTCCTTCTCCTTTTT
TCCCGTCCCCCCCCCCCCCTCTTTCCCCTCTCCCCCCGTCTTCCCTTTTC
TCTCCTCCCCCCGCCCCGTTTCCCTTCTTTTTCCTTTTTGCCCCTCTTTT
CTTTCCCTTCTCTTCTCCCCTCTTGTCCCCCCCCCTGCCTTTTCCTCTCT
TTTCCCCCCCCTCCCCTCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_i07.b1 MSMg01no303_i07.b1 CHROMAT_FILE:
MSMg01no303_i07.b1 PHD_FILE: MSMg01no303_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:27 2005
         (319 letters)



>mm_chr13_4806566_4807284
          Length = 719

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatagctctgttaaaaacatttggacaggacatttaggacaagttcaagtaaagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcatagctctgttaaaaacatttggacaggacatttaggacaagttcaagtgaagt 264

                                                                       
Query: 65  ttattgttaaaatgcatttgtgaaatgagaaagtgaggatggagcaataggtagaggttg 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 ttattgttaaaatgcatttgtgaaaggagaaagtgaggatggagcaataggtagaggttg 324

                                                                       
Query: 125 caatgttctcagtaatggctcacttactgtttataaatattttattaagaaagaaaggaa 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 caatgttctcagtaatggctcacttactgtttataaatactttattaagaaagaaaggaa 384

                                                                       
Query: 185 aggattttcttttttaaaaaagataatagctcttgctaagttttctaatgagctcctgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggattttcttttttaaaaaagataatagctcttgctaagttttctaatgagctcctgaa 444

                                                                       
Query: 245 agtcaattttaacattataagattgtaaattttatcatccttgatcaattgttataaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtcaattttaacattataagattgtaaattttatcatccttgatcaattgttataaaat 504

                          
Query: 305 atttccacattcatg 319
           |||||||||||||||
Sbjct: 505 atttccacattcatg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)