Query= MSMg01no304_j06.b1 MSMg01no304_j06.b1 CHROMAT_FILE:
MSMg01no304_j06.b1 PHD_FILE: MSMg01no304_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:24 2005
(742 letters)
>mm_chr13_114110127_114111268
Length = 1142
Score = 1365 bits (706), Expect = 0.0
Identities = 733/742 (98%)
Strand = Plus / Minus
Query: 1 tgtccctccctctgtgcacaagcatccctgtgttgttgactatgcggacataggcctctg 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 942 tgtccctccctctgtgcacaagcagccctgtgttgttgactatgcggacataggcctctg 883
Query: 61 acacactgacctcaaaaagggatgacgtgtaatggacaccatctgtcacaaaaatcagga 120
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 882 acacactgacctcgaaaagggatgatgtgtaatggacaccatctgtcacaaaaatcagga 823
Query: 121 accgtgcgaaatctggaccgtggtgcctgaagagcacacgcccttcccgtaggtcctctt 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 accgagcgaaatctggaccgtggtgcctgaagagcacacgcccttcccgtaggtcctctt 763
Query: 181 gtctgaactggtagagcttccgaattgggtcagcagctttcaccaaatctccattgggta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gtctgaactggtagagcttccgaattgggtcagcagctttcaccaaatctccattgggta 703
Query: 241 tgccatgccgagtgtagagcaactggccatcgtcaaaatctatgtcggggtcatggtaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tgccatgccgagtgtagagcaactggccatcgtcaaaatctatgtcggggtcatggtaac 643
Query: 301 agagatctgctagtgtcagtaagcgctggctgtcccgcacaacgtgaaagatcttatcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 agagatctgctagtgtcagtaagcgctggctgtcccgcacaacgtgaaagatcttatcca 583
Query: 361 ccacacgcaccggcttctcgtcattcttcaactcaacagaaacgctgactttgatctctg 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ccacacgcaccggcttctcatcattcttcaactcaacagaaacgctgactttgatctctg 523
Query: 421 tagacgtgtgctcagagtcaagacttctgacccctccctgttggcccagacctgtggcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tagacgtgtgctcagagtcaagacttctgacccctccctgttggcccagacctgtggcag 463
Query: 481 aggccagaaggatgaattcatcccactgggtctcagagtcatcatgaacatagaccagcc 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 462 aggccagaaggatgaattcatcccactgggcctcagagtcatcatgaacatagaccagcc 403
Query: 541 tcccactcactatgttttcgtctgtgaatccagtggccctattgtcacttcccagagaag 600
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tcccactcactatgtcttcgtctgtgaatccagtggccctattgtcacttcccagagaag 343
Query: 601 cagacgagctgaccaatttcagttccccatgctgaggactcttggtgactttatattgga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cagacgagctgaccaatttcagttccccatgctgaggactcttggtgactttatattgga 283
Query: 661 agacatgattatccagtgtttgaacaaataactctgattttgtaattattgccctttccc 720
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 282 agacatgattatccagtgtttgaacaaataattctgattttgtaattattgtcctttccc 223
Query: 721 cctctttaacatacagtccagt 742
||||||||||||||||||||||
Sbjct: 222 cctctttaacatacagtccagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1142
Length adjustment: 10
Effective length of query: 732
Effective length of database: 1132
Effective search space: 828624
Effective search space used: 828624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_j06.g1 MSMg01no304_j06.g1 CHROMAT_FILE:
MSMg01no304_j06.g1 PHD_FILE: MSMg01no304_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:24 2005
(720 letters)
>mm_chr13_113919786_113920905
Length = 1120
Score = 1237 bits (640), Expect = 0.0
Identities = 690/720 (95%), Gaps = 23/720 (3%)
Strand = Plus / Plus
Query: 1 ttccctctccagcaccaagcctttctgcacactaccgtgcttctcgccatgatggttatg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 224 ttccctctccagcaccaagcctttctgcacactaccatgcttctcgccatgatggttatg 283
Query: 61 aactaaatctctgaaactgtaagccagtcccaattaaatgtttgctttataagagttgct 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 284 aactaaatctctgaaactgtaagccagccccaattaaatgtttgctttataagagttgct 343
Query: 121 gtggtctcttcacagcaataaaatccaaactaagacaaactctaactaaatgtataccac 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 344 gtggtctcttcacagcaataaaatctaaactaagacaaactctaactaaatgtataccac 403
Query: 181 tagctacccgtggggagctttattcttaaaaacaaaacaaaacaaacaaacaaacaaaaa 240
|||||||| |||||||||||||||||||| |||| |||||
Sbjct: 404 tagctacctgtggggagctttattcttaa---------aaaa-------------aaaaa 441
Query: 241 aactggaggcatcatgtgtgtaatagaggcctattatcacaggaggtaaaactaagaacc 300
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 442 aa-tggaggcatcatgtgtgtaatagaggcctattatcacaggagggaaaactaagaacc 500
Query: 301 tatatcacacacctttaggctcctcagatgatctctgcctcctgtgtttaggtctctcat 360
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacatcacacacctttaggttcctcagatgatctctgcctcctgtgtttaggtctctcat 560
Query: 361 ttctctccagctgttaccatgacaaccagctctgcacaggctgaaaacagcttcacacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctctccagctgttaccatgacaaccagctctgcacaggctgaaaacagcttcacacag 620
Query: 421 attcatttaacttagtccctcacaatgtatttctcactctacacttccagtcttacacat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attcatttaacttagtccctcacaatgtatttctcactctacacttccagtcttacacat 680
Query: 481 cgcaattgggtgtgagacagcaaaagattttcctggaagatccaggaaataacacagtaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgcaattgggtgtgagacagcaaaagattttcctggaagatccaggaaataacacagtaa 740
Query: 541 cagctgaaatttttctgcagacccttgttttcagagacaattgccaaaaatggttagcca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagctgaaatttttctgcagacccttgttttcagagacaattgccaaaaatggttagcca 800
Query: 601 acattctcattttatctgtgttatttaacacacataagcagtgaaaagtggggagaggac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acattctcattttatctgtgttatttaacacacataagcagtgaaaagtggggagaggac 860
Query: 661 tcaggggagtcgccgagcctgatgcttcgagttcaattcccaggaacccacatggtggaa 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tcaggggagtcgccgagcctgatgcttcgagttcaattcccaggaacccacatggtggaa 920
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1120
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1110
Effective search space: 788100
Effective search space used: 788100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
