Query= MSMg01no305_h03.b1 MSMg01no305_h03.b1 CHROMAT_FILE:
MSMg01no305_h03.b1 PHD_FILE: MSMg01no305_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:23 2005
(269 letters)
>mm_chr13_19524120_19524788
Length = 669
Score = 513 bits (265), Expect = e-150
Identities = 268/269 (99%)
Strand = Plus / Minus
Query: 1 agggattggaaagattaaaaactaggacttttaaaaacatcacacttagaatacagcaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 agggattggaaagattaaaaactaggacttttaaaaacatcacacttagaatacagcaat 297
Query: 61 attctaaactatcaaagtaaaggacagggtagttcatggtggtattggttgaacttcact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 attctaaactatcaaagtaaaggacagggtagttcatggtggtattggttgaacttcact 237
Query: 121 agcataggccaaaatgaaaagttgcttagatgggcgatgagcctcgcaggcaaatggatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 agcataggccaaaatgaaaagttgcttagatgggcgatgagcctcgcaggcaaatggatg 177
Query: 181 gaactagaaaatatcatcctgtgtgagataacacaatcagtcctacttagaagagggaac 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 176 gaactagaaaatatcatcctgtgtgagataacacaatcagccctacttagaagagggaac 117
Query: 241 aaaataattatgggaggtagagggtggga 269
|||||||||||||||||||||||||||||
Sbjct: 116 aaaataattatgggaggtagagggtggga 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space: 171600
Effective search space used: 171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no305_h03.g1 MSMg01no305_h03.g1 CHROMAT_FILE:
MSMg01no305_h03.g1 PHD_FILE: MSMg01no305_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:23 2005
(385 letters)
>mm_chr13_19302834_19303619
Length = 786
Score = 634 bits (328), Expect = 0.0
Identities = 370/384 (96%), Gaps = 3/384 (0%)
Strand = Plus / Plus
Query: 1 agaaacttctgggaaaaccctacaaaaa-gtagaataagacttctcaacctgtgtgagca 59
|||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||
Sbjct: 201 agaaacttctggaaaaaccctagaaaaaggtagaataaaacttctcaacctgtgtgagca 260
Query: 60 tggcccacatttcaaggcagagtgtgttcagtcctgagattcttgattacacttaaactt 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tggcccacatttcaaggcagagtgtgttcagtcctaagattcttgattacacttaaactt 320
Query: 120 gatgtgactttgtttcagttttgtctccatttaatatcaacagagccaaatttgtatatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgtgactttgtttcagttttgtctccatttaatatcaacagagccaaatttgtatatt 380
Query: 180 catataaatagtaaaatattgctgggtgttttacgtgttcacaagataaatttcagatgt 239
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 catataaatagtaaaatattgctgggtgttttacatgttcacaagataaatttcagatgt 440
Query: 240 tgtggattatatgctaaat-catccaagtgcttgaccctggcacaaagcttatttctgca 298
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtggattatatgctaa-tacatccaagtgcttgaccctggcacaaagcttatttctgca 499
Query: 299 gggacatattctttatattctgtagagtaaattatttagagaggctggagggcaggtgct 358
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 500 gggacatattctttatattctgtagagtaaagcaggaagagaggctggagggcaggtgct 559
Query: 359 gcaagtgccagtctcagcatcttt 382
||||| ||||||||||||||||||
Sbjct: 560 gcaagcgccagtctcagcatcttt 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 786
Length adjustment: 9
Effective length of query: 376
Effective length of database: 777
Effective search space: 292152
Effective search space used: 292152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
