BAC Information

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BAC

Clone NameMSMg01-305M09
Chromosome13 (Build37)
Map Location 96,254,449 - 96,254,828
singlet/doubletsinglet
Overlap genenone
Upstream geneAp3b1, Tbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z
Downstream geneF2rl1, F2r, Iqgap2, F2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305M09.T7 (MSMg01no305_m09.b1)MSMg01-305M09.TJ (MSMg01no305_m09.g1)
ACCAG430634AG430635
length6361,292
length of high quality
(start - end)
---380 (72 - 451)
definitionCHROMAT_FILE: MSMg01no305_m09.b1 PHD_FILE: MSMg01no305_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:07 2005CHROMAT_FILE: MSMg01no305_m09.g1 PHD_FILE: MSMg01no305_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTATGCCATATCAAGGGAGACCGATCTGATAATCTTCTCACGGGCTT
GTGGAGGGAGAGCTATCGAAGACCGGTGTAGAGCAACCGACTAGAGCTGT
GTGACAAGAAAATATCGCCTACAGATACGTCATGATTTTTCTGTTATGAT
TCCAACTAGGAAACGTCTGGAAGCTTTACACCCGTGCGTGAAGCAATTGA
ACACTAATGACTTTTTTTTCAGTTGACGGGAAGAGGAATTTTTTTCCCCC
CCGANAGTTAAAAAAGGGGNNNNNNTNNNNNNTGTTTTGTTTTGTTTTTT
TTTTTTTTGTTTTTGTTGTTTTGGGTGTTTTTTGGGGGGGGTTGGTTGTT
TTTGTGGGGTTTGTTGTTGTTTTTTTGTTTGTGGGTTTTGTTGTTTTGTT
TTTTTTTTTTGGGTTGTGGTTTGTTTGTGTTGTGTTTTTTTTTTTTTTTG
TTTTTTGGTTTTTTTTTTTGTTTTTTTTGTTTTTTTTTGTTTTTTTTTTT
TTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TGTTGTGGGTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NNNCCCGTGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACAGATCTCCACTTAGGCGCAGCTGAA
TTTGTGACTTCATCCAGAAAGAATTTCAGGGCAAGATGGCATAAAGGAGC
TGGAATTTATTCAAGGGATTTAAGAGGTTCTCAGGGAAAGCATAAGACAC
ATCCAAGACCAGGATTGTGAGCCTCTCAAGAGGGACTCTTGTAACAGTAG
CATATATGCAGTAGTATATATGAAGTATATGTAGCATATATGTAGTAATG
TATATGAAGAATATGTAGCATATATGTAGTAACAATGGCACATGTGGTTT
GGTGGCTTTCAAGTCACATCTCAGATGGCTTCTAAGAAACTTTCTCCCCA
TTTTTTCCCTCTTTTTCTAGTAAGAGTATAAGGTCGCCCTGCAGGTGCGT
GTTTTTTTTTTTCCCCCCCCCCCAANTATGAGCCCCCCACTAAAAAAAGG
GGGGGGGGACGGNTGTTTTATTGTAAATGGGGTTTCTTGTGAGGTTCCTT
GAAAATTGTAGGCTTGCATCTGGGAAAGGAGAACAAACCATATACACTCA
GGCTGTAAGTATGGTTTGTTGTTATCTTAATATTCTCACTTGAAATTTCT
CCACACAAAGGAATATGGTCTCTGTAGGCAACGTTCCCAGGGGCTGCTGA
CTGTGCTGGGATTCATGCACTTCTTCCTCCCTTCATTCTAACGTGGCTTC
CAGGGATCGAATCCCTGGTCCCAATGTTCACAAGGCAAGCACTTTACTGG
CCAAGCCGTCTGCCGAGGTTTGTGCCAGAATTCTTGATGCCCAACCGAAG
AGAGACTTGAGCCAGACTTTGGGATAAAGGGGTTTCTTCCTGCTCTCTTC
TCTTTAACTTCCCCCCTTTTATCTACCTCCAGGGGAACCCCGGAAGTTCG
AACACCAGGAAGAAGGATCGCAGGGTATCTTTTTGAAGGTTACTTACCTC
GGAGACCTTGTTCCACTTTTCGGCAAAAGGAAGGGTGGGCTTTTAATGGG
GGAAATTTATCCGGTAAACGGCCTCATTTTAATGCTCTCAAATGGCACGG
ATGATAGCCTCTTTCTTGTCAAAACTTGGGGGGTGGCTTTTACACACCCT
GTGGAGTGGCCCCGCCTAACTTATTTAGTCGACTCTCTTCCACAACGTGC
TCAAATTTATAAATAGACTTTCATTTTAATTCTTCTAGTCTTAGTAATAA
CGTCATAATACTCTCTCTCACCTCTTCTCGTCTATTTAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_m09.g1 MSMg01no305_m09.g1 CHROMAT_FILE:
MSMg01no305_m09.g1 PHD_FILE: MSMg01no305_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:08 2005
         (380 letters)



>mm_chr13_96254249_96255028
          Length = 780

 Score =  719 bits (372), Expect = 0.0
 Identities = 378/380 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacagatctccacttaggcgcagctgaatttgtgacttcatccagaaagaatttcaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tcacagatctccacttaggcgcagctgaatttgtgacttcatccagaaagaatttcaggg 521

                                                                       
Query: 61  caagatggcataaaggagctggaatttattcaagggatttaagaggttctcagggaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 caagatggcataaaggagctggaatttattcaagggatttaagaggttctcagggaaagc 461

                                                                       
Query: 121 ataagacacatccaagaccaggattgtgagcctctcaagagggactcttgtaacagtagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ataagacacatccaagaccaggattgtgagcctctcaagagggactcttgtaacagtagc 401

                                                                       
Query: 181 atatatgcagtagtatatatgaagtatatgtagcatatatgtagtaatgtatatgaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 atatatgcagtagtatatatgaagtatatgtagcatatatgtagtaatgtatatgaagaa 341

                                                                       
Query: 241 tatgtagcatatatgtagtaacaatggcacatgtggtttggtggctttcaagtcacatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tatgtagcatatatgtagtaacaatggcacatgtggtttggtggctttcaagtcacatct 281

                                                                       
Query: 301 cagatggcttctaagaaactttctccccattttttccctctttttctagtaagagtataa 360
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 280 cagatggcttctaagaaactttctccccactctttccctctttttctagtaagagtataa 221

                               
Query: 361 ggtcgccctgcaggtgcgtg 380
           ||||||||||||||||||||
Sbjct: 220 ggtcgccctgcaggtgcgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)