BAC Information

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BAC

Clone NameMSMg01-306A14
Chromosome13 (Build37)
Map Location 84,129,404 - 84,129,776
singlet/doubletsinglet
Overlap genenone
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119
Downstream geneLOC667081, LOC667101, Tmem161b, LOC666795, LOC667111, LOC382786, LOC100042841
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306A14.T7 (MSMg01no306_a14.b1)MSMg01-306A14.TJ (MSMg01no306_a14.g1)
ACCAG430817AG430818
length765758
length of high quality
(start - end)
377 (389 - 765)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no306_a14.b1 PHD_FILE: MSMg01no306_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:41 2005CHROMAT_FILE: MSMg01no306_a14.g1 PHD_FILE: MSMg01no306_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTAATTCTTACCTTCCACAATTATTCAAAATTTTGCTTTCTCT
AAACTAGGCCTTGGATACAATTTAGACATATCTAGAACCCTGGAGTCTGG
AATGTAAGGCTCAGTGGTAACTGGTATGGTATAGAGACCAGGATCAGGCA
GGATAATTTCTGTTGCATTGATTTTTAATAAATGTACAAACCAAAGCAAC
AGCAATAGAAAAGCAAATTTAATACATCTGTCGACCACAGATTTGTTTAA
AACAATGAAATTATGGTTAAAAAGTATAAATCTTGGAATCTTAGGATTAG
TAGGCAAACACTTGTTTTGTTTTGTTTCGCCCCCGCCTTTAATATAAACT
AATTTATCAACTGATTCAAATGGATAGACCTGAAAGTGGAATTCATTTGT
TGGGAAAAATTATTGTGGCCTTTCTGTTAAGATATAAAGGCTTTTATTCA
ATATGTTGACGTCTTAAAAATGAAAAACGAAAGGATGAATGTGGCTCACT
GGTAAAGTGCTTCACTACCACATGTAGTGGGTCCATTCCCCAGCATCTCA
ACCTAACCGATCAGACAGACAAAATACCGAGATTAAGCATACTTTTAGAA
ACTGAAGCAACCAGGAAGAAACTTGAATCGAGTGTAATACCATCTCTTGG
CAGATGGAGATAGGAGGATTAGAAGTCCATCCATTTAACACAAGAAAGGA
AAGGGAGGAAGAAAN
TCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATTTAGCTCTGTTCCCCATTTTTAA
TAGGGTTATTTGGTTCTCTGGACCCTAATTTCTTGAGTTCTTTGTATATA
TTGGATATTAACCCTCTATCTGATGAAGAATTGGTAAAGGTCTTTTCCCA
ACCTGTTGGTTGCTGTTTATTTCTATTGACAGTGTTCTTTGCCTTACAGA
AGCTTTATAATTTTATGAGGTCCCATTTGTCGATTCTTGATCTAGGGCAT
AAGCCATTGGTGTTCCATTCAGGAATTTTTCCCTGTGCCCATGTGTTCGA
GGCTGTTCTATTTGATANTCCCGCCNTCTCCCCCTAGATAGGGAGAGAGA
GGGCAGCCTTGTCTAGTCCCCGATTTAAAAGAAATTGCTTCAACTTTCTC
TCCATTTAGTTTGATGTTAGCTACTGGTTTGCTGTATATTGCTTTTACTA
TGTTTAAGTATGGGCCTTGAATTCCTGATCTCTCCAAAACTTTTAACATG
AAGGAATGTTGAATTTTGTCAATTGTTTTTTCAGCATCTAATGCAATGAT
CATGTGGTTTTTTTCTTTGAGTTTTTTTTTTTAATGTAGTGGATTACATT
GATGTATTTCTCTATATTGAGTGATCCCTGCATCCTGGGGATGAAGCCTA
TTTGATCATGGTAAATGATATGTTCTTGGATTCGGTTTGTGAGATTTTAT
TTAGTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_a14.b1 MSMg01no306_a14.b1 CHROMAT_FILE:
MSMg01no306_a14.b1 PHD_FILE: MSMg01no306_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:41 2005
         (377 letters)



>mm_chr13_84129204_84129980
          Length = 777

 Score =  632 bits (327), Expect = 0.0
 Identities = 363/377 (96%), Gaps = 5/377 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatataaactaatttatcaactgattcaaatggatagacctgaaagtggaattcattt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ttaatataaactaatttatcaactgattcaaatggatagacctgaaggtggaattcattt 260

                                                                       
Query: 61  gttgggaaaaattattgtggcctttctgttaagatataaaggcttttattcaatatgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgggaaaaattattgtggcctttctgttaagatataaaggcttttattcaatatgttg 320

                                                                       
Query: 121 acgtcttaaaaatgaaaaacgaaaggatgaatgtggctcactggtaaagtgcttcactac 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 acgtcttaaaaatgaaaaacgaaaggatgaatgtggctcattggtaaagtgcttcactac 380

                                                                       
Query: 181 cacatgtagtgggtccattccccagcatctcaacctaaccgatcagacagacaaaatacc 240
           |||||||||     |||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 cacatgtagc----ccattctccagcatctcaacctaaccgatcagacagacaaaataca 436

                                                                       
Query: 241 gagattaagcatacttttagaaactgaagcaaccaggaagaaa-cttgaatcgagtgtaa 299
           ||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 437 gagattaagcatatttttagaaactgaagcaaccaggaagaaatcttgaattgagtgtaa 496

                                                                       
Query: 300 taccatctcttggcagatggagataggaggattagaagtccatccatttaacacaagaaa 359
           | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 497 tcccatctcttggcagatggagataggaggattagaagtccatccatttaaaacaagaaa 556

                            
Query: 360 ggaaagggaggaagaaa 376
           |||||||||||||||||
Sbjct: 557 ggaaagggaggaagaaa 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)