Query= MSMg01no306_b11.b1 MSMg01no306_b11.b1 CHROMAT_FILE:
MSMg01no306_b11.b1 PHD_FILE: MSMg01no306_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:45 2005
(292 letters)
>mm_chr13_55650374_55651065
Length = 692
Score = 543 bits (281), Expect = e-159
Identities = 290/293 (98%), Gaps = 2/293 (0%)
Strand = Plus / Plus
Query: 1 catctcggtggtccaccgcaggctccccagggatcccgcccagggtgtcccccct-catg 59
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 201 catctcggtggtccaccgcaggctccccagggatcccgcccagggtg-ccccccttcatg 259
Query: 60 ggcagctcctctttccgcctggtcagcctcgagcggagcttctcccggatctcagtataa 119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 260 ggcagctcctctttccgcctggtcagccttgagcggagcttctcccggatctcagtataa 319
Query: 120 ttccggctcgtcggggcagcgagtggctgggggagggggaggtgctgacattacaccctg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttccggctcgtcggggcagcgagtggctgggggagggggaggtgctgacattacaccctg 379
Query: 180 ggcctgggaggcccatggcactcccacccgctggcaccatgtatgtggtgagaagccaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggcctgggaggcccatggcactcccacccgctggcaccatgtatgtggtgagaagccaga 439
Query: 240 taatcattctctctagcatcagccaccaaggccaaatggcttcatcctcagta 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taatcattctctctagcatcagccaccaaggccaaatggcttcatcctcagta 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no306_b11.g1 MSMg01no306_b11.g1 CHROMAT_FILE:
MSMg01no306_b11.g1 PHD_FILE: MSMg01no306_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:45 2005
(526 letters)
>mm_chr13_55819857_55820782
Length = 926
Score = 994 bits (514), Expect = 0.0
Identities = 523/526 (99%)
Strand = Plus / Minus
Query: 1 catgtgattgtgcgctatccaaagtgggtgctgggaattgaacttgggtcctctggacga 60
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 catgtgattgtgcaccatccaaagtgggtgctgggaattgaacttgggtcctctggacga 712
Query: 61 gcagagctcccttagctgtttagccagctctctagcccctcgttcagacttctttaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gcagagctcccttagctgtttagccagctctctagcccctcgttcagacttctttaaaaa 652
Query: 121 cttgggttttttggtggtgctggggattgaacccagggccttacacaagcgaggcaagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 cttgggttttttggtggtgctggggattgaacccagggccttacacaagcgaggcaagtg 592
Query: 181 ctctatccccgagctagtctcagctccagaaaaggaaactgctgtgattctgatcgcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ctctatccccgagctagtctcagctccagaaaaggaaactgctgtgattctgatcgcaag 532
Query: 241 tgcctgggtgtccgtccagtaggacgttttccatggccttgttagtgggagtagtctagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgcctgggtgtccgtccagtaggacgttttccatggccttgttagtgggagtagtctagg 472
Query: 301 aatgactggcttttggtcacctaaacatcatcttttcttttaagacagcagggctgcaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aatgactggcttttggtcacctaaacatcatcttttcttttaagacagcagggctgcaat 412
Query: 361 acaaatccccagcacctcataatattaagcgtggtagtgcagacctaagaccccagcact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 acaaatccccagcacctcataatattaagcgtggtagtgcagacctaagaccccagcact 352
Query: 421 ccagaggctgaggcagaagaatcaacatctaaagtcataggttgggctggagagatagct 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ccacaggctgaggcagaagaatcaacatctaaagtcataggttgggctggagagatagct 292
Query: 481 cagtgggtaagagcactggctgctcttccagaggtcctgagttcaa 526
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cagtgggtaagagcactggctgctcttccagaggtcctgagttcaa 246
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
