BAC Information

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BAC

Clone NameMSMg01-306E18
Chromosome13 (Build37)
Map Location 46,795,238 - 46,795,530
singlet/doubletsinglet
Overlap geneNup153
Upstream geneAtxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339
Downstream geneKif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306E18.T7 (MSMg01no306_e18.b1)MSMg01-306E18.TJ (MSMg01no306_e18.g1)
ACCAG431003AG431004
length769769
length of high quality
(start - end)
314 (456 - 769)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no306_e18.b1 PHD_FILE: MSMg01no306_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:02 2005CHROMAT_FILE: MSMg01no306_e18.g1 PHD_FILE: MSMg01no306_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGACAGTCACGNGCTAGACAGAGAAACCCTGTCTCGAAAAAAC
AAAAGTAAATAAAAAAGGATGTAGCACACTGATCAGTGGTTCGACATTTA
TTTGATGTACATGTACCCCGGAACCAGAGCATAAAATAAGACACTTGTAA
AGCTATTGTTCAAGGGCTGAGTATGTGTCAAAGCTCTAGCTTTAGATAAT
AATATTAAAGGAGAATGCCTCCCCCACCAAAAGAAATGCTAAGCTGGGTG
ATGGTGACGCACACCTTTAATTCCAGTTCTTGGGAGGCAGAGGCAGGCAG
ATCTCTGTGAGTCTGATTTTTTTCTGCCCCACCCAGCGAGTTCCAGAAGA
GCCAGGGCTACACAGAGAACAGAGAAACCCTGTCTTGAGAAAGACCAGAG
GAAAGAAAAAAAAAAAAAAAGGAAAGGAAAAGAAATACTAAATGAGATTC
AGTTAAGCAGTGTCCCAAATGTGGAAAACTTTACAGGAAAAATGTCACCA
AAGAGAAGCAACTAACATAGAGTCTAGGAAATAAACTTTAAAAAGCAAGA
ACAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGATATTCTA
GATGGTCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCATAACCATCT
ATAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGAAGCTACAGTAG
TATACTCATATATATAAAA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGATTTAAAATTCATGAACCAA
GTACCTAATCAGGGAAGCTAAGGGAGACAAAAGTACTTGAGCCCAGTTTG
AAGTCAGCCTGGGCAACACAGCCAGATTCTATCTTGAATAAATGAATGAA
AAAAGGTATTAACAGTATGGCATGTCTCTGACAGCATTTTTCATTCTTTA
TACATTTTCTTCTTTCAAAACATTACATAAAATACTCATAAAACTCTAAT
ACCCCACCTCCTGAATTATGAACAATACCTTATAAATATGAGGTTAGAGG
AACAAGAAATGGACTTCATATATTACCCCCCCCCCCCCCATCTTTATTAC
CTACCTATGACAAAAACCAAAACAACAAGAACAAAAAAAACAAGCATACA
TCCAAAACCTGAAAACAAGCCAGGTGTGGCCTAATCTGAGCACTTGGGAA
GCAAAGGTAGGTAGAGCTCTTCCAGGTCAAGACTATCCTACATAATGAGC
CTACACAATGAGCTCCCAGCCAGCCAGGGCTACACAGTGAGACCTCGTCT
CAAAGAAACAAAGCAAAACAAAAAAATCTAAAAGCAACATATAAAGATGA
TATATTAGTGGAAGTTTACAAAATATGAACATTGTTTATTATTCTTACCC
AAATATTTCCCAATAACAAGAAAAAATATATTATGTAACAATACTCAAAA
TAGACCCTGTTCATTTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_e18.g1 MSMg01no306_e18.g1 CHROMAT_FILE:
MSMg01no306_e18.g1 PHD_FILE: MSMg01no306_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:02 2005
         (291 letters)



>mm_chr13_46795038_46795730
          Length = 693

 Score =  555 bits (287), Expect = e-162
 Identities = 291/293 (99%), Gaps = 2/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagatttaaaattcatgaaccaagtacctaatcagggaagctaagggagacaaaagtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagatttaaaattcatgaaccaagtacctaatcagggaagctaagggagacaaaagtac 260

                                                                       
Query: 61  ttgagcccagtttgaagtcagcctgggcaacacagccagattctatcttgaataaatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgagcccagtttgaagtcagcctgggcaacacagccagattctatcttgaataaatgaa 320

                                                                       
Query: 121 tgaaaaaaggtattaacagtatggcatgtctctgacagcatttttcattctttatacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaaaaaggtattaacagtatggcatgtctctgacagcatttttcattctttatacatt 380

                                                                       
Query: 181 ttcttctttcaaaacattacataaaatactcataaaactctaataccccacctcctgaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttctttcaaaacattacataaaatactcataaaactctaataccccacctcctgaat 440

                                                                
Query: 241 tatgaacaataccttataaatat--gaggttagaggaacaagaaatggacttc 291
           |||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 441 tatgaacaataccttataaatatatgaggttagaggaacaagaaatggacttc 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 693
Length adjustment: 9
Effective length of query: 282
Effective length of database: 684
Effective search space:   192888
Effective search space used:   192888
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)