BAC Information

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BAC

Clone NameMSMg01-306M01
Chromosome13 (Build37)
Map Location 99,866,007 - 99,866,679
singlet/doubletsinglet
Overlap geneLOC100039797
Upstream geneRgnef, LOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967
Downstream geneZfp366, Ptcd2, Mrps27, Mtap1b, Cartpt, Mccc2, Bdp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306M01.T7 (MSMg01no306_m01.b1)MSMg01-306M01.TJ (MSMg01no306_m01.g1)
ACCAG431322AG431323
length7221,137
length of high quality
(start - end)		676 (45 - 720)---
definitionCHROMAT_FILE: MSMg01no306_m01.b1 PHD_FILE: MSMg01no306_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:38 2005CHROMAT_FILE: MSMg01no306_m01.g1 PHD_FILE: MSMg01no306_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGAATTGAGCCTTTCCCTGCCCTAAGACACCCACAACTCTTGAC
ATTTACAGTTAACTGGTTTTCGAACTTGCATTCAATGAAACCAAAATAGA
GATACTCATTTGGTTGTAGCTTTTCTTCAACTTGGTATTTCTGAAATTTG
TCCAGCTTGGTTGCAAGAGATATCATTAAAACACCTGCCCCTCACAAACA
AACAAACAACAAACGAAAAGCAAAACCCAAAATAACATTTTGGAGCTGGG
AAGATCACTCAGTCAGTCAAGCTTGAGTGACAGGCATAAATATCAGAGTT
CGATCCCTGGAACTCAAGTAAAAAAGCTGGAAGTGGTTGTCACATAACTG
TCATTCCGGGGGAGATGGAAACCAGCAGGTCCTTGGGATTTCCTGGTCAG
GGAACCAGTGCTTTAAGAGATCCTGTCTCAAAAGACAATGTGGACGGCTC
CTTAGGAGTCACACACGTGCTTGCCTGACCTCTGGCCTTATAAGTGTATA
CACCCCTCACACAATGCACCCACATAGACACATACAAAGCATTGCTTTCC
TAAAATAAATTGTGTATTTGGGTTGACCGTTGGTCTGTTATTAGAACAGA
AGATGCACCTTANAGCATGCCTTCTGCCTATTTCTGCTTGTTGATCAGCA
GATAACATTGCCGTACTGCACG

GAGTGAGATGAANAGAGTNGNGCGGATGTTGCGGCCGGTGGCCCGCCTGA
GATCATCTCTTGAGCGAGGGGAGAGGGCGNGTGCTANNAAAAANNNNNCT
AATGCGGNCACCTGAANGNGNNNNNNNNNNNGTNNGTGACGAAAGAAGGA
GGGGGNNNNNNNNGAGGGGGGNGNNNNNNNNGGGGGGNNGGGGGNNGNNG
GNTGTTTTGTCCCCCAAAAAAAAGAGGGTGAGGGAGGGGAGGGTGGGATA
NTGGGTATGGGGTGGAGAAGGAGAAGGAACGGATAGAGCACGAGAATGGA
GGCCATAATGAAGGGGCGAGAGGGATGGGAGCGGGGCGGCCGGGGAGAGT
ACTAGGGACGGGGAGATCGAAGGTGTGGATGCGGGTGAATTGAGATTACG
GCGGGGAAGGGTGAAGAAGGGGTGCGATCTGGGGTGATGTGAGAGTAGTA
GGGCAGGGACGGAGGGCTGAGGGACGAGAGGAGGTAGGCGTATTGTGTTT
TGTGGTAGCGGGCGGCGTAAGAGGATCAGAGAGTGGTGGAGGGGGGAGGG
GTGGGGTGTTGGTGTGGGGCCAGGGGCGGGAGGGCATGAGGGGAGAAGGA
GCGGGTATAAGACGGAAGTGGCGCCTGGCGGAGAGCGGGAGTTAAAGAGA
ATAGAAAAAGAAGTAGAGAGGGAGGACGGATGGTGGGGGTGGGGAGGTGA
ATCGCGGAAGCGGGAGCGAGGGACGTAAAGGGAAGGCGGTGGGGGGCGCG
GCGAGAGTGTAGGTCGAATGGCGGGTGGGGGCGGGGGNGTGTGTGAATGG
AAGGCTGTCGGCGGGTGATGTTTAGCGGTGGGTGTAGCGGTCTGGAGTGG
ATACGGGGGAGGCGCAGTCGATGGATAGCTAGGGGACGAAGCGAGAGGGA
CGACGGCGGTGTGATGAGCGGTGGTGAGGACGCGGAGAATAGGAGGGTAA
GGGCGTAGGTNACCGGTGATAGGGACATTGATAGGTGGACGTGCGGGCGA
TGCAGGTAGGGTGAGAGATGTGGATGTATACGGCGTGAGCGCGACTGTGA
GACTGACGAGCTATGAGCGGGTGGATAGAGACCGTAGGAAAAGTGGGATG
GTGAAGGGACGCAGGGTGGAGTGTATGTTTTTGTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_m01.b1 MSMg01no306_m01.b1 CHROMAT_FILE:
MSMg01no306_m01.b1 PHD_FILE: MSMg01no306_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:38 2005
         (676 letters)



>mm_chr13_99865805_99866879
          Length = 1075

 Score = 1189 bits (615), Expect = 0.0
 Identities = 659/674 (97%), Gaps = 2/674 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtgaattgagcctttccctgccctaagacacccacaactcttgacatttaca 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcagtgaatttagcctttccctgccctaagacacccacaactcttgacatttaca 262

                                                                       
Query: 64  gttaactggttttcgaacttgcattcaatgaaaccaaaatagagatactcatttggttgt 123
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 263 gttaactggttttcgaacttgcattcaatgaaaccaaagtagagatactcatttggttgt 322

                                                                       
Query: 124 agcttttcttcaacttggtatttctgaaatttgtccagcttggttgcaagagatatcatt 183
           |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 323 agcttttcttcaacttggtatttctgaaatttgttcagcttggttgtaagagatatcatt 382

                                                                       
Query: 184 aaaacacctgcccctcacaaacaaacaaacaacaaacgaaaagcaaaacccaaaataaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaaacacctgcccctcacaaacaaacaaacaacaaacgaaaagcaaaacccaaaataaca 442

                                                                       
Query: 244 ttttggagctgggaagatcactcagtcagtcaagcttgagtgacaggcataaatatcaga 303
           ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 443 ttttggaactgggaagatcactcagtcagtcaagtttgagtgacaggcataaatatcaga 502

                                                                       
Query: 304 gttcgatccctggaactcaagtaaaaaag-ctggaagtggttgtcacataactgtcattc 362
           ||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||
Sbjct: 503 gttcgatccctggaactcaagtaaaaaaatctggaagtggttgtcacataattgtcattc 562

                                                                       
Query: 363 cgggggagatggaaaccagcaggtccttgggatttcctggtcagggaaccagtgctttaa 422
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctggggagatggaaaccagcaggtccttgggatttcctggtcagggaaccagtgctttaa 622

                                                                       
Query: 423 gagatcctgtctcaaaagacaatgtggacggctccttaggagtcacacacgtgcttgcct 482
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gagatcctgtcttaaatgacaatgtggacggctccttaggagtcacacacgtgcttgcct 682

                                                                       
Query: 483 gacctctggccttataagtgtatacacccctcacacaatgcacccacatagacacataca 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gacctctggccttataagtgtatacacccctcacacaatgcacccacatagacacataca 742

                                                                       
Query: 543 aagcattgctttcctaaaataaattgtgtatttgggttgaccgttggtctgttattagaa 602
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aagcattgttttcctaaaataaattgtgtatttgggttgaccgttggtctgttattagaa 802

                                                                       
Query: 603 cagaagatgcaccttanagcatgccttctgcctatttctgcttgttgatcagcagataac 662
           |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 803 cagaagatgcaccttaaagcatgccttctgcctatttctgct-gttgatcagcagataac 861

                         
Query: 663 attgccgtactgca 676
           ||||||||||||||
Sbjct: 862 attgccgtactgca 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1075
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1065
Effective search space:   709290
Effective search space used:   709290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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