BAC Information

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BAC

Clone NameMSMg01-307A07
Chromosome13 (Build37)
Map Location 43,319,005 - 43,319,368
singlet/doubletsinglet
Overlap geneGfod1
Upstream geneEdn1, Hn1-ps4, Phactr1, Tbc1d7
Downstream geneSirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432, A730030A06
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307A07.T7 (MSMg01no307_a07.b1)MSMg01-307A07.TJ (MSMg01no307_a07.g1)
ACCAG431510AG431511
length729740
length of high quality
(start - end)
365 (44 - 408)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no307_a07.b1 PHD_FILE: MSMg01no307_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:57 2005CHROMAT_FILE: MSMg01no307_a07.g1 PHD_FILE: MSMg01no307_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCAACATTGCTGAATGCACACAACCCAAATGCATTCACCGCAGTTG
CAGTTACGGTCGCCCCAAACTGAAAACAGCTCAACATCTATCAACAGCTG
GATAGATAAGCAACTGTGACCCACAAAACAGACTTGACTTCAGAAATAAC
ACATAAACTACTGAGATGGGAGGGATGGGGGTGCTCTAAAGTGTTACACC
ACGTGAGAAGAAACAAAGGAGTCCCCTCTGCTGACAGACAACTGAAAAAT
GACAGAAGCGAGCTATCATTTTAGAAAGCACAGACACCACTACCTGCCCA
GGCTGGCGTTGGAGCTAGGAGGGTGAGAATTCATGGCAGGACACCCAAAA
TGCTAGAAAGAGCCCACCCCCTCTGACTGGTGTAGTGCTGCATAGCTGTG
TATCTGTTTTTCTCAAACCTCATCAAGAAATACATTTTAACTGGGTGGTG
GTGGTGCATGCCTTTAATCTCATCACTTGGGAGGCAGGAGCTAGTATGAT
CTACAGAACTAGTTTCAGGATAGCCAGGGTTATGCTGAAACCCTGTCTCA
CAAAACATATACGTGTGTGTGTGTGTAATGGATGTATTTATTCTCACCCA
TTCCCCTCTCTGAAGTTTTATATCCATATATATATATATATATATATACA
TATATATATCCCAATACTCAAATAATAAA
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAGAGGGGTAGGTGACCTCTATC
TTAATCTTGGCTCTGTCTCTAGGCACATTCCAGAACCATTGCTGGGGTCT
GGGGGACTGGAAACTGTTGTTGGGGAGGTCTGGAAACTGCTACTGAGGAA
GTCTGGAAATTGCTGCTAACCCACTGTCTTTGCCTCAGGCCAGGTGGCAA
GACAGCTTCAGAGGTCTGGACTTGCCCAGTTCTTGGAAACAGAGATTTAG
GCCTCGTCTCCTGAACTGCCTATTTGAAGTCTGTCATGAAGTCAGCCTAG
CCTTCTCACTGTTTTTTGTTTAACCGCGCGCTGCAAACATATTGAATACT
CAGAAGTGAACACAGGCCCCCCCACCAAGATCATTAGGTTCAAACATTAA
TAATTTAGTATGTTCAATTTTGGTTAGAACAAAATAATTCAACTGACCAT
TGTAGCTCTTGCTATAGATGAATCAGATTTTTTTATGTGCTCTTTGTTTT
TATTTCTATTTTGTGTGCGTGTGTGTGTGTGTGTGTGTGCGTGTCGTGCG
TTTCGCATCCTTTTTTCCCCCACTTTCCCCCCTTACCCCTCCCCTTTTTC
CCCTATCCCTTACTTTTTTTCCCTTCCCTTTTTCTTTTTCCCCCTCCCCT
TCTTCCTCCCTTCCTTCTTTCTTTTCCCCCTTTTTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_a07.b1 MSMg01no307_a07.b1 CHROMAT_FILE:
MSMg01no307_a07.b1 PHD_FILE: MSMg01no307_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:57 2005
         (365 letters)



>mm_chr13_43318804_43319568
          Length = 765

 Score =  572 bits (296), Expect = e-168
 Identities = 347/368 (94%), Gaps = 10/368 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctccaacattgctgaatgcacacaacccaaatgcattcaccgcagttgcagtta 63
           |||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctccaacagtgatgaatgcccacaacccaaatgcattcaccgcagttgcagtta 261

                                                                       
Query: 64  cggtcg-ccccaaactgaaaacagctcaacatctatcaacagctggatagataagcaact 122
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cggtcgcccccaaactggaaacagctcaacatctatcaacagctggatagataagcaact 321

                                                                       
Query: 123 gtgacccacaaaacagacttgacttcagaaataacacataaactactgagatgggaggga 182
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 322 ctgacccacaaaacagacttgacttcagaaataacacataaactactgagatgggcgggg 381

                                                                       
Query: 183 -tgggggtgctctaaagtgttacaccacgtgagaagaaacaaaggagtcccctctgctga 241
            ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 gtgggggtgcactaaagtgttacaccacgtgagaagaagcaaaggagtcccctctgctga 441

                                                                       
Query: 242 cagacaactgaaaaatgacagaagcgagctatcatttt----agaaagcacagacaccac 297
           ||||||||||||||||||||||||||||||||||        |||||||||||||||  |
Sbjct: 442 cagacaactgaaaaatgacagaagcgagctatca----caagagaaagcacagacacggc 497

                                                                       
Query: 298 tacctgcccaggctggcgttggagctaggagggtgagaattcatggcaggacacccaaaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tacctgcccaggctggcgttggagctaggagggtgagaattcatggcaggacacccaaaa 557

                   
Query: 358 tgctagaa 365
           ||||||||
Sbjct: 558 tgctagaa 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)