Query= MSMg01no307_o16.b1 MSMg01no307_o16.b1 CHROMAT_FILE:
MSMg01no307_o16.b1 PHD_FILE: MSMg01no307_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:05 2005
(704 letters)
>mm_chr13_117461261_117462364
Length = 1104
Score = 942 bits (487), Expect = 0.0
Identities = 502/507 (99%), Gaps = 2/507 (0%)
Strand = Plus / Minus
Query: 5 gaattctcctgt-gtttctcccaacatacataaacctatgtacaaaactcatgaacatat 63
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaattctcctgtggttt-tcccaacatacataaacctatgtacaaaactcatgaacatat 448
Query: 64 atgttcacatataaattaacatcctgacgagttgaaattgcaaactcacacatgctctgc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atgttcacatataaattaacatcctgacgagttgaaattgcaaactcacacatgctctgc 388
Query: 124 catgcaactcctctgagaaatttcatcaaagatttgttagagatcaaaggcagtatctat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 catgcaactcctctgagaaatttcatcaaagatttgttagagatcaaaggcagtatctat 328
Query: 184 tgcagcttatacttcttatagaaagtttaacatgaaatatttaattttagagtttagtgc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgcagcttatacttcttatagaaagtttaacatgaaatatttaattttagagtttagtgc 268
Query: 244 taggacaaatttttattcaccaccttttgtggatatttcttgctcacccatcccttctta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 taggacaaatttttattcaccaccttttgtggatatttcttgctcacccatcccttctta 208
Query: 304 cacttattgattattattattaaataacaataatatttattgttactattgtgtttatta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 cacttattgattattattattaaataacaataatatttattgttactattgtgtttatta 148
Query: 364 ttgttactaccaccattattattagatatgtgtatgtgtgtgtgtgttagcaccatcaaa 423
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ttgttactattactattattattagatatgtgtatgtgtgtgtgtgttagcaccatcaaa 88
Query: 424 catgtgtgtagatcctaggtcaatttacaagacttagctgtctccttccagtgtgtgggt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 catgtgtgtagatcctaggtcaatttacaagacttagctgtctccttccagtgtgtgggt 28
Query: 484 tctgggaatgtaactcaggtagcaaag 510
|||||||||||||||||||||||||||
Sbjct: 27 tctgggaatgtaactcaggtagcaaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no307_o16.g1 MSMg01no307_o16.g1 CHROMAT_FILE:
MSMg01no307_o16.g1 PHD_FILE: MSMg01no307_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:06 2005
(676 letters)
>mm_chr13_117306183_117307258
Length = 1076
Score = 1236 bits (639), Expect = 0.0
Identities = 666/683 (97%), Gaps = 14/683 (2%)
Strand = Plus / Plus
Query: 1 acgtgtctctgatactctttgtatacctctgtagacataagttataatttcttacatggc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 acgtgtctctgatactctttgtatacctctgtagacataagttataattttttacatggc 260
Query: 61 agcaagaaaaataaatgagggctaatcttaatgacagtaattccttcttgtatttataga 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaagaaaaataaatgaggtctaatcttaatgacagtaattccttcttgtatttataga 320
Query: 121 acacatgttaaaacttgtaagctacatttgttagctggagatgaaacaagatcaaagttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacatgttaaaacttgtaagctacatttgttagctggagatgaaacaagatcaaagttt 380
Query: 181 ttcttttaaaattactcttttaagagcatgttcaggatgtgaaatgataggcttcaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttttaaaattactcttttaagagcatgttcaggatgtgaaatgataggcttcaataa 440
Query: 241 aacattattatatcatgtgctttgccatctcctgtctctttcaactgtctgcctctgctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacattattatatcatgtgctttgccatctcctgtctctttcaactgtctgcctctgctt 500
Query: 301 tccacacgtcctacttctgcttttctgtctcaagtatattcaa-------cccccacctt 353
|||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct: 501 tccacacgtcctacttctgcttttctgtctcacgtatattcaaggtgattc-------tt 553
Query: 354 gacgcatggacaatcaaatggtggaaatggggcaaaagactacttgctcaagtattgagt 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gacgcatggacaatcaaatggtggaaatggggcaaaagactacttgctcaagtattgagt 613
Query: 414 gaggtttgtcaacagagaacaggaggctactgcaccttatgacacagttttgaggagaaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gaggtttgtcaacagagaacaggaggctactgcaccttatgacacagttttgaggagaaa 673
Query: 474 gccttgtgtatctaaacagagttctgaaagactattgaaattttatttttactttgatac 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gccttgtgtatctaaacagagttctgaaagactattgaaattttatttttactttgatac 733
Query: 534 aaaataattattttagtattaattttagtcaacatacaaaataatatatttattagcttt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aaaataattattttagtattaattttagtcaacatacaaaataatatatttattagcttt 793
Query: 594 tcatatgtattatacatcattgtactttgctcatatctgcctgtctcctactccccctgg 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tcatatgtattatacatcattgtactttgctcatatctgcctgtctcctactccccctgg 853
Query: 654 cctgtatcccctgatttgtagtt 676
|||||||||||||||||||||||
Sbjct: 854 cctgtatcccctgatttgtagtt 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
