BAC Information

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BAC

Clone NameMSMg01-308A19
Chromosome13 (Build37)
Map Location 69,953,320 - 70,128,806
singlet/doubletdoublet
Overlap geneMed10
Upstream geneAdcy2, LOC666205, LOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik
Downstream geneEG620143, LOC100042291, 4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308A19.T7 (MSMg01no308_a19.b1)MSMg01-308A19.TJ (MSMg01no308_a19.g1)
ACCAG432232AG432233
length725725
length of high quality
(start - end)
345 (72 - 416)343 (74 - 416)
definitionCHROMAT_FILE: MSMg01no308_a19.b1 PHD_FILE: MSMg01no308_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:16 2005CHROMAT_FILE: MSMg01no308_a19.g1 PHD_FILE: MSMg01no308_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,128,462 - 70,128,806)(69,953,320 - 69,953,662)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCCTGCACATCTGCGTGACTATATGCTTTTATAGATCTTCACCTACA
TATCTACACGCCTGAGTACCCGTATATCTATCTGCGTCTCTACCCATCTT
CGCACGTATATGCTTGAACACCTGCACACCAGAGCACCTGCAGGCCTATA
TTACACACCTGCATGTATTAATCACCTGTAAGGCTCTCAGCCTAGTACTC
CCTGAAGCAACTGCACTCTACCCACCACTGTTGCCATAATCCCCTCACAG
CACCTGTGGCTCAGGTTCCACTTTGTCATCTGTAATGAAACTCTCTGCAG
AGAGGCGGTGCTTCTCTGTGCTCCACAGAAGGCTGCCATGAACACTAAGC
TTGGTCTGTTAGGTGTCCCACCGCAAGGGGCATCTACCTCAGGTTTTGAT
GATTCAGGCTTCCTGTCTGAGAGCAGAACCCAACCTCTATGATCTTCTCC
ACCAGCACCAGGAAGTCATTACTTTAGGCTTCCTGACTCAGGACCAATGA
TTACATGAGACGGACTCTGGCTGAAATAGTAGACTCCTGAAATATCTAAG
ACGTGTTCCCAGCTATCTTCCTTATATTGTGATCTAAGCGAGTTAGGTTT
AACATACATTTTTCTTTTTCTTTTTTGACTGGCTCTGGCTGTCCTGGAAC
TCAGGCTAGCCACAAACTCTGAGAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGTTCCTTTTGCACAGTGAGCCTCCT
CCTCAGCTCAGCCAGCTTTGCTTCCTGTGACAGCTCAGCCTGGCCTTCCT
CAACAAGAGTTCCTTGTGCAGGGTGCTGGTTGGGGTGTCCGTAACTTTCT
CTCCACCCACTGTCCACTGCCCTGCCAGCCTCACTCCAGCATTGCTTGCT
CTACCTGTGCTGCTCGCCACTTGCCTGATGCCAGCCTGGCCTACACGTGC
TGGGTGTGTCTGCTGTGTGCATGTTGCCCAGAGAGCCTGCAGCTGGAGTG
AGCAAGGGGCTCTGTCAGATCATGTGCTGCAGAGTGGGGTTGGTCAGGAT
AACCCTGAGCCCCTGCACCACCCCCCCCTGTCAGCTTGGACTGAGGAATT
CCTGGATGTCCAGCAGAAATACCCTTTGGATTGTGACTGGCCCCTGGGGC
TTCGGTCCTACCTGTATCTCAGACTCATTGCCTTGGGCCGTGCTGGAGTG
CATTACCCATTGATGGTGCTCATGTGGTTAATTTTCCCTGAGCACTTGCC
GCTCTTGCTGCCATTTCTCACCTGAGACCCGTGACAGTCTCAAGGCACAC
TTCTGAGGTCTGCATGCCCCCATTGGGCACCAGTTAAAGTTTTTCAGTTG
TTGCAGTGGGATTGCATGTGTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_a19.b1 MSMg01no308_a19.b1 CHROMAT_FILE:
MSMg01no308_a19.b1 PHD_FILE: MSMg01no308_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:16 2005
         (345 letters)



>mm_chr13_70128262_70129006
          Length = 745

 Score =  644 bits (333), Expect = 0.0
 Identities = 342/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatatgcttttatagatcttcacctacatatctacacgcctgagtacccgtatatctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ctatatgcttttatagatcttcacctacatatctacacgcctgagtacccgtatatctat 486

                                                                       
Query: 61  ctgcgtctctacccatcttcgcacgtatatgcttgaacacctgcacaccagagcacctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctgcgtctctacccatcttcgcacgtatatgcttgaacacctgcacaccagagcacctgc 426

                                                                       
Query: 121 aggcctatattacacacctgcatgtattaatcacctgtaaggctctcagcctagtactcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aggcctatattacacacctgcatgtattaatcacctgtaaggctctcagcctagtactcc 366

                                                                       
Query: 181 ctgaagcaactgcactctacccaccactgttgccataatcccctcacagcacctgtggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctgaagcaactgcactctacccaccactgttgccataatcccctcacagcacctgtggct 306

                                                                       
Query: 241 caggttccactttgtcatctgtaatgaaactctctgcagagaggcggtgcttctctgtgc 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 305 caggttccactttggcatctgtaatgaaactctctgcagagaggcggtgcttcacagtgc 246

                                                        
Query: 301 tccacagaaggctgccatgaacactaagcttggtctgttaggtgt 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tccacagaaggctgccatgaacactaagcttggtctgttaggtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no308_a19.g1 MSMg01no308_a19.g1 CHROMAT_FILE:
MSMg01no308_a19.g1 PHD_FILE: MSMg01no308_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:16 2005
         (343 letters)



>mm_chr13_69953120_69953862
          Length = 743

 Score =  640 bits (331), Expect = 0.0
 Identities = 340/343 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttccttttgcacagtgagcctcctcctcagctcagccagctttgcttcctgtgacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgttccttttgcacagtgagcctcctcctcagctcagccagctttgcttcctgtgacag 260

                                                                       
Query: 61  ctcagcctggccttcctcaacaagagttccttgtgcagggtgctggttggggtgtccgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagcctggccttcctcaacaagagttccttgtgcagggtgctggttggggtgtccgta 320

                                                                       
Query: 121 actttctctccacccactgtccactgccctgccagcctcactccagcattgcttgctcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttctctccacccactgtccactgccctgccagcctcactccagcattgcttgctcta 380

                                                                       
Query: 181 cctgtgctgctcgccacttgcctgatgccagcctggcctacacgtgctgggtgtgtctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgtgctgctcgccacttgcctgatgccagcctggcctacacgtgctgggtgtgtctgc 440

                                                                       
Query: 241 tgtgtgcatgttgcccagagagcctgcagctggagtgagcaaggggctctgtcagatcat 300
           |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtgcaggcagcccagagagcctgcagctggagtgagcaaggggctctgtcagatcat 500

                                                      
Query: 301 gtgctgcagagtggggttggtcaggataaccctgagcccctgc 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgctgcagagtggggttggtcaggataaccctgagcccctgc 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)