BAC Information

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BAC

Clone NameMSMg01-309F09
Chromosome13 (Build37)
Map Location 119,761,202 - 119,761,510
singlet/doubletsinglet
Overlap genenone
Upstream geneHcn1, LOC674926, Mrps30, LOC668309, LOC100041278, Fgf10
Downstream geneLOC100041298, LOC100041757, Nnt, Paip1, LOC100041802, 4833420G17Rik, 3110070M22Rik, EG633640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309F09.T7 (MSMg01no309_f09.b1)MSMg01-309F09.TJ (MSMg01no309_f09.g1)
ACCAG433154AG433155
length718749
length of high quality
(start - end)
315 (46 - 360)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no309_f09.b1 PHD_FILE: MSMg01no309_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:53 2005CHROMAT_FILE: MSMg01no309_f09.g1 PHD_FILE: MSMg01no309_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTATTACATTTTCACGCATGTATCAGAATACTTTGTTCCTATTC
AAGCCCCTTGCTAACCCCCTTGCCCCCTTGACCTCCCCATTGTTCCAACT
CTCCCTTCCTTAATAATCTCCCTTATGCTTCCATGTTGCACATAAGGCAT
ATATGTAGTTAAAATCAAGATTCTATATGTAAAAGAAAATGTTACACTTG
TCTTCCTTCTTATATTAATTTGATCCCTCTCTCTTCCTTTCATACACTTT
ACTTCCTGCCCTTTAATATACCTCATTTTCTATATTCATGTAATATTTGT
GTCTATATTTCTTTATTCCCACATCATCCCCCTATACTTCAAGTATAATA
TTATTTTAAGTGAACCACCCACACAAACAGAAACCATGCATTTGTGTTTC
TTAGTCTGGTTTAACAACCATTATCGTGCACATAACATACTTTAATTCTT
CCTTAACGCTGTATATAACTCCAGTGCGTTTATATGTATAAGTGCACATT
CATACCTGTCTTCTTGACCTCTTATTTCGTGTACAGGCGCCCAGTCTGTT
TTTGTTACTACTTGATTTGCGATTATTTTTCCCCGGTTCCCCTACTAGTA
TCTTCTGTTTATGCCCATCTTCAAATCTTGCGTTTTATATTTATATCACC
CGCCCCCTCATTCCTCAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGGAG
GAAGAAGCAGCTCATTATGAGAAAAAAGGGTACCAGCCAGGTAAAGTGCT
AGCTAATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGCTG
ATTGGCCTCAGGGCAGTCGGCTTCAAGGTCCGCCCTATGCGGAGTCCCCG
CCCTGCGTAGTGCGTCAGCCCTGCGCAGAGAGACAATGCGCAGAGAGGCA
ATGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAATACAACAGG
CATTTCCAGTCTTTTTAGTAGTTTACCCTGGCCGCGCCCACGCTCCGGTA
GAATACGTACAGATTAAAGAACCCGCCGAGACAAAACGTAAATACGGAAC
CGAGGCTAATTTTACCTTGGTGCAGTTAGACAGGCTCGCCGGCATGGCAC
TAACTCCTGCCGACTGGCAAACGGTTGTAAAAGCCGCTCTCCCTAGTATG
GGCAAATATATGGAAAGGAGAGCTCTTTGTCATGAAGCTGCTCAAGCGCA
AGCCCGATCAAACGCAGCTTGTTTTGACTCCAGAAGCAGAGAGATTGGAC
TTTTTGACTTTGTAAACGAGGCAGGGAGCTTTATTCTGCTTGATTCAGAA
CAAGCTACCATCGTGGGAGCTTAAGCCCAAAATTCTTTCCCACGGCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_f09.b1 MSMg01no309_f09.b1 CHROMAT_FILE:
MSMg01no309_f09.b1 PHD_FILE: MSMg01no309_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:53 2005
         (315 letters)



>mm_chr13_119760998_119761712
          Length = 715

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattattacattttcacgcatgtatcagaatactttgttcctattcaagcccctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattattacattttcacgcatgtatcagaatactttgttcctattcaagcccctt 264

                                                                       
Query: 65  gctaacccccttgcccccttgacctccccattgttccaactctcccttccttaataatct 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 gctaacccccttgcccccttgacctccccattgttccaactctcccttccgtaataatct 324

                                                                       
Query: 125 cccttatgcttccatgttgcacataaggcatatatgtagttaaaatcaagattctatatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccttatgcttccatgttgcacataaggcatatatgtagttaaaatcaagattctatatg 384

                                                                       
Query: 185 taaaagaaaatgttacacttgtcttccttcttatattaatttgatccctctctcttcctt 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaaagaaaatgttacatttgtcttccttcttatattaatttgatccctctctcttcctt 444

                                                                       
Query: 245 tcatacactttacttcctgccctttaatatacctcattttctatattcatgtaatatttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcatacactttacttcctgccctttaatatacctcattttctatattcatgtaatatttg 504

                    
Query: 305 tgtctatat 313
           |||||||||
Sbjct: 505 tgtctatat 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)