BAC Information

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BAC

Clone NameMSMg01-309F19
Chromosome13 (Build37)
Map Location 72,223,947 - 72,224,236
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627230, LOC100042360, Irx1
Downstream geneLOC100042828, LOC100042832, LOC100042836, Irx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309F19.T7 (MSMg01no309_f19.b1)MSMg01-309F19.TJ (MSMg01no309_f19.g1)
ACCAG433172AG433173
length885739
length of high quality
(start - end)
182 (63 - 244)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no309_f19.b1 PHD_FILE: MSMg01no309_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:55 2005CHROMAT_FILE: MSMg01no309_f19.g1 PHD_FILE: MSMg01no309_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGG
CCTTGCCACAGACTTTTCTGAGATATAAAGTCCTTGGAAGAAAGGTCTCT
TTCCTCATGAGCTTCCTGGTAAAATGTGTGCATTACTGGGTAAGAGTGGT
AATACATGGGTAAGGCTGGTCTGCAAGCCAGNGACAGCATCTGGCTCCCC
AGTATGTTCCACACCTGTAGGATCACCCGTGTATGACAACAGCGAAGTGA
AATCTTTTTTGTAAATTCATNAGTCCAGCCTCTATANGGTAGCACGAAGT
AGGTGATTTTGAAATCGTATCACAGGAGCCTTTTTTTTTTTTAGAAGCNA
NAGAGNGAGAGACANCNGAAAGGAAGCNTTTTTGGGGTGGATTCTCCCCG
NNGCCCAACCCCCCNGGNNGGGAGAGAGGNGAGAGGAAGGGGGGGGGGGG
GNNNGNNNAAAAAAAANNNAAAANNNNNAAAAGGNNNNNNNGGNNNNNNN
GGGGNNNNNNNNNNNNNNNNNNNNNNNNNNGNGGNNNNGNGNNGNGNNNG
GGGAGGNNGGGGGGGGAGGGGNNNGGGGGGGGGGGGGGGGGGGGNNGGGG
GNGNGGNNGAGGGGGGGGGGGGGGGGNGNNGNGGGGGGAGGGGGGGGGGG
GGGGGGGGGGGGGGGGNGGNGGNGGGGGNGGGGGGGGNGGGGGGGGGGGG
GGGGGGGGGGGGGGGGAAGGNGGGGGGGNNGGGGGNGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGNGNGNGTTGNGGAGGGAGAAGGAAGAGGAGGAGG
GGAGAGGAGGAGAAAAAGGAAGGAAGGAAAGGGGGAAGGGAAGGAGGGAG
AGAGAAAGGAGGAGGGGGGAAAGAAGAGGGAAAAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTGGTTAGTTTAGGTGGCTTGTTAGT
GAACTCAGGAATCTGCTTGTTTTTGCCACCCAGCACTGGAATCAAGAGCA
TTATCTTGCCTGGCTTCTTAGGCGGGGGCTGGGCTCAAATTCTGGTTCTA
ATGCTTATGTAGCAAGCACCTTAGCAACTGAACAATCTCCCCAGATCCAA
ATACCTTATAATGGAATGTCCAAAGCACAGGAACACATAGACAAGCATAC
AGACATATACACAGACACAGACATCCCCTCCACACCACCACCCCACGTCC
TGCCAGCTCTCTCTTTATTTCTACCCCTCCACCCCCTTGACAATTTGAAG
TAACCATGGCAACCCTCACTTATGGCATGAGCACCTGACCAAGCAGAATC
TTCCCACAGAACATGGAAGGTAGAAATGGTGTCACACCATTTTGTCAGGT
ACAGCATCAGACATTGCCTGAGCATATTGGGTAGAAGAACCTAGTGGAGA
CCAATGTCATCAACACACACCTCTTGAACCAAATGGTTCTGACTGCACTG
CTCTAAGTGCGGATTTAGAGACACGATATTCAGGGACAGTGTTTTCTGTG
TAATGCTGATGGTCAGTTTCTGTAGTAGATAGCTAAATTGATAAGAAGGG
ATGATGATGGTAATGGTGGTGNATGTTTTNNTNTTTNTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_f19.g1 MSMg01no309_f19.g1 CHROMAT_FILE:
MSMg01no309_f19.g1 PHD_FILE: MSMg01no309_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:55 2005
         (290 letters)



>mm_chr13_72223572_72224261
          Length = 690

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctggttagtttaggtggcttgttagtgaactcaggaatctgcttgtttttgccacccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cctggttagtttaggtggcttgttagtgaactcaggaatctgcttgtttttgccacccag 606

                                                                       
Query: 61  cactggaatcaagagcattatcttgcctggcttcttaggcgggggctgggctcaaattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cactggaatcaagagcattatcttgcctggcttcttaggcgggggctgggctcaaattct 546

                                                                       
Query: 121 ggttctaatgcttatgtagcaagcaccttagcaactgaacaatctccccagatccaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ggttctaatgcttatgtagcaagcaccttagcaactgaacaatctccccagatccaaata 486

                                                                       
Query: 181 ccttataatggaatgtccaaagcacaggaacacatagacaagcatacagacatatacaca 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 485 ccttataatggaatgtccaaagcgcaggaacacatagacaagcatacagacatatacaca 426

                                                             
Query: 241 gacacagacatcccctccacaccaccaccccacgtcctgccagctctctc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gacacagacatcccctccacaccaccaccccacgtcctgccagctctctc 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)